Factsheet for Solyc08g082100.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400032040	Potato	cytosol	96.31	86.23
VIT_02s0025g01250.t01	Wine grape	cytosol	73.85	73.85
KRH77634	Soybean	cytosol, nucleus	70.77	70.55
KRH27852	Soybean	cytosol, nucleus	70.15	69.94
Bra027738.1-P	Field mustard	plastid	64.62	64.02
AT1G64350.1	Thale cress	plastid	64.0	63.8
CDY08370	Canola	plastid	64.31	63.72
GSMUA_Achr2P06320_001	Banana	cytosol	63.38	62.42
TraesCS3A01G223900.1	Wheat	cytosol	59.69	60.06
TraesCS3B01G253300.1	Wheat	cytosol	59.38	59.75
TraesCS3D01G229700.1	Wheat	cytosol	58.77	59.13
HORVU3Hr1G055410.2	Barley	cytosol	58.77	59.13
Os01t0620100-01	Rice	nucleus	58.46	58.64
Zm00001d044193_P002	Maize	peroxisome	58.15	58.51
EES03291	Sorghum	cytosol	58.15	58.33
CDY47852	Canola	cytosol	64.62	57.85
Solyc03g120900.1.1	Tomato	cytosol	22.77	24.58
Solyc02g087300.1.1	Tomato	extracellular, nucleus	21.23	22.85

Protein Annotations

Gene3D:2.130.10.10	MapMan:23.5.1.1.1.7	GO:GO:0003674	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005635	GO:GO:0006810
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0015031	GO:GO:1904263
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:K4CPK6	InterPro:Nucleoporin_Seh1	PFAM:PF00400
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR11024	PANTHER:PTHR11024:SF3	SMART:SM00320	SUPFAM:SSF50978
InterPro:Sec13/Seh1_fam	EnsemblPlantsGene:Solyc08g082100.2	EnsemblPlants:Solyc08g082100.2.1	UniParc:UPI000276C4BC	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

Protein SEH1 [Source:Projected from Arabidopsis thaliana (AT1G64350) UniProtKB/Swiss-Prot;Acc:Q93VR9]

Coordinates

chr8:+:64993102..64998303

Molecular Weight (calculated)

35885.2 Da

IEP (calculated)

4.370

GRAVY (calculated)

-0.086

Length

325 amino acids

Sequence
(BLAST)

001: MDKAIIKLEE GTTCTAWNYS GHRLAAGSTD GTLFVFDSTD PASSVFSGSS KFKVHESSIV KVVWAPPEYG DVVACICADG SLLLWEEVVE DSELLQWKLC
101: KCFDRISSLV LDVQFGVSQT SLKLVAAYSD GQVKVFELLD PFELKNWQLQ AEFQNVIESV SKFGNVSCRS ASIAWNPLKG EIQQSSFVLG FDSDTPHLNS
201: SKVWEFDQDH QRWLPVAELA LPADKADPVS TVAWAPNIGR PYELIAVATC KEIALWHVGS NPDSDGRLSV EKVAMLSTHD SEVWQMEWDM SGMTLATTGS
301: DGVVRLWQCN LNGVWHEQAT LQPTS

Best Arabidopsis Sequence Match ( AT1G64350.1 )
(BLAST)

001: MAKSMATLDS GTTCSSWNQS GDRLAAGSLN GKLSIYESST SSSSTFSCTS KVRVSESSIV KIVWLPSEYG DAVACVCEDG SLSIWEELSE DAHGLEWKLC
101: KSMKNKSSQV LDVQFGVSRK SLKMVAAYSD GYLRVFELLN PLELKNWQLQ AEFQNVIDSL STLGKPSSLS ASVSWNPMKG EEQEPSFVLA FNSDSPHLNS
201: SKIWEFDEAH NRWLAVAELA LPEDKGDPVY ALSWAPNIGR PYEVVAVATH KGIGIWHVGL APDLEGRLPV KKVSSLSGHQ GEVWQMEWDM SGMTLASTGS
301: DGMVKLWQSN LNGEWHEQAT LEPVPS

Arabidopsis Description

SEH1Protein SEH1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VR9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.