Factsheet for Bra027738.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47852	Canola	cytosol	97.56	88.15
AT1G64350.1	Thale cress	plastid	85.98	86.5
KRH27852	Soybean	cytosol, nucleus	67.38	67.79
VIT_02s0025g01250.t01	Wine grape	cytosol	66.46	67.08
Solyc08g082100.2.1	Tomato	nucleus	64.02	64.62
KRH77634	Soybean	cytosol, nucleus	63.72	64.11
PGSC0003DMT400032040	Potato	cytosol	64.63	58.4
GSMUA_Achr2P06320_001	Banana	cytosol	58.23	57.88
Os01t0620100-01	Rice	nucleus	55.79	56.48
EES03291	Sorghum	cytosol	55.49	56.17
TraesCS3B01G253300.1	Wheat	cytosol	55.18	56.04
TraesCS3A01G223900.1	Wheat	cytosol	55.18	56.04
Zm00001d044193_P002	Maize	peroxisome	54.57	55.42
TraesCS3D01G229700.1	Wheat	cytosol	54.57	55.42
HORVU3Hr1G055410.2	Barley	cytosol	54.57	55.42
Bra039126.1-P	Field mustard	cytosol	20.73	22.52
Bra022774.1-P	Field mustard	cytosol	20.12	21.93
Bra018343.1-P	Field mustard	cytosol	19.82	17.81
Bra021603.1-P	Field mustard	plastid	20.12	9.54

Protein Annotations

Gene3D:2.130.10.10	MapMan:23.5.1.1.1.7	EnsemblPlantsGene:Bra027738	EnsemblPlants:Bra027738.1	EnsemblPlants:Bra027738.1-P	GO:GO:0003674
GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005635	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	GO:GO:0015031	GO:GO:1904263	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M4EG25	InterPro:Nucleoporin_Seh1	PFAM:PF00400	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR11024
PANTHER:PTHR11024:SF3	SMART:SM00320	SUPFAM:SSF50978	InterPro:Sec13/Seh1_fam	UniParc:UPI000254228C	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

AT1G64350 (E=2e-164) SEH1H | SEH1H; nucleotide binding

Coordinates

chrA09:+:6530822..6532510

Molecular Weight (calculated)

35946.2 Da

IEP (calculated)

4.623

GRAVY (calculated)

-0.223

Length

328 amino acids

Sequence
(BLAST)

001: MATKSMATLD SGTTCSSWNY SGHRLAAGSV DGTLSVYDSP VPSSYSSFTR SSKVRVSESS LVKIVWLPSE YGDAVACICE DGSLSIWEEV SEDTHALEWK
101: LCKSLMSKSS QVLDVQFGVS RKSLKMVAAY SDGYLRVFEL LNPLELKNWQ LQAEFQNVID SLSALGKPST LSASVSWNPM RSGEQEPSFV LAFNSDSPHL
201: NSSKIWEFDE AHNRWLAVAE LASPEDKGDP VYAVSWAPNI GRPYEVVAVA THKGIGIWQV GLAPDLDGRL PVKKAASLSG HQGEVWEMEW DMSGMTLATT
301: GSDGMVRLWQ SNLNGEWHEQ AMLEPVPS

Best Arabidopsis Sequence Match ( AT1G64350.1 )
(BLAST)

001: MAKSMATLDS GTTCSSWNQS GDRLAAGSLN GKLSIYESST SSSSTFSCTS KVRVSESSIV KIVWLPSEYG DAVACVCEDG SLSIWEELSE DAHGLEWKLC
101: KSMKNKSSQV LDVQFGVSRK SLKMVAAYSD GYLRVFELLN PLELKNWQLQ AEFQNVIDSL STLGKPSSLS ASVSWNPMKG EEQEPSFVLA FNSDSPHLNS
201: SKIWEFDEAH NRWLAVAELA LPEDKGDPVY ALSWAPNIGR PYEVVAVATH KGIGIWHVGL APDLEGRLPV KKVSSLSGHQ GEVWQMEWDM SGMTLASTGS
301: DGMVKLWQSN LNGEWHEQAT LEPVPS

Arabidopsis Description

SEH1Protein SEH1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VR9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.