Factsheet for Os01t0620100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

nucleus: 19621931

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044193_P002	Maize	peroxisome	85.49	85.76
TraesCS3B01G253300.1	Wheat	cytosol	85.19	85.45
TraesCS3A01G223900.1	Wheat	cytosol	84.88	85.14
HORVU3Hr1G055410.2	Barley	cytosol	84.57	84.83
TraesCS3D01G229700.1	Wheat	cytosol	84.57	84.83
EES03291	Sorghum	cytosol	83.33	83.33
GSMUA_Achr2P06320_001	Banana	cytosol	65.43	64.24
VIT_02s0025g01250.t01	Wine grape	cytosol	61.11	60.92
KRH27852	Soybean	cytosol, nucleus	58.95	58.59
Solyc08g082100.2.1	Tomato	nucleus	58.64	58.46
KRH77634	Soybean	cytosol, nucleus	58.02	57.67
AT1G64350.1	Thale cress	plastid	57.1	56.75
Bra027738.1-P	Field mustard	plastid	56.48	55.79
CDY08370	Canola	plastid	56.48	55.79
PGSC0003DMT400032040	Potato	cytosol	58.02	51.79
CDY47852	Canola	cytosol	56.48	50.41
Os02t0135800-02	Rice	cytosol	21.3	22.62
Os03t0831800-01	Rice	cytosol, plastid	18.52	19.93

Protein Annotations

Gene3D:2.130.10.10	MapMan:23.5.1.1.1.7	EntrezGene:4326622	EMBL:AK070122	ProteinID:BAD61210.1	ProteinID:BAD61535.1
ProteinID:BAF05511.1	ProteinID:BAS73204.1	ProteinID:EEE55004.1	GO:GO:0003674	GO:GO:0005198	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005635
GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0015031
GO:GO:1904263	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	InterPro:Nucleoporin_Seh1	EnsemblPlantsGene:Os01g0620100
EnsemblPlants:Os01t0620100-01	PFAM:PF00400	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR11024	PANTHER:PTHR11024:SF3
UniProt:Q5ZBF5	SMART:SM00320	SUPFAM:SSF50978	InterPro:Sec13/Seh1_fam	UniParc:UPI00004504BF	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_015621834.1	SEG:seg	:

Description

OsWD40-19WD40 repeat-like domain containing protein. (Os01t0620100-01)

Coordinates

chr1:-:24703771..24708911

Molecular Weight (calculated)

35276.3 Da

IEP (calculated)

4.664

GRAVY (calculated)

-0.173

Length

324 amino acids

Sequence
(BLAST)

001: MAERQVAELG AGAACVGWNH CGRRLAAGAV DGFVSVYDSQ SQPSPSSKWQ AHKHAILNIV WLPPDYGDAI ACVCADGTLS LWEEVSEDDQ LPTWRKCKVF
101: ESGNSHILHV QFGLQLSSLK MVTAYSDGQV KVYELLDSLE LDKWQLQAEF QNITDPVSRS GKPACTSASI AWSPRRGESQ QASFAIGFNS DSPNFNSCKI
201: WEFEEAHQRW LPLVELGSPQ DKGDIVHAVA WAPNIGRPYE IIAVATCKGI AIWHIGLSAE SDGSLSTENV AVLSGHDGEV LQLEWDMGGM TLASTGGDGM
301: VKLWQANLNG VWHEQAVLDC NVSH

Best Arabidopsis Sequence Match ( AT1G64350.1 )
(BLAST)

001: MAKSMATLDS GTTCSSWNQS GDRLAAGSLN GKLSIYESST SSSSTFSCTS KVRVSESSIV KIVWLPSEYG DAVACVCEDG SLSIWEELSE DAHGLEWKLC
101: KSMKNKSSQV LDVQFGVSRK SLKMVAAYSD GYLRVFELLN PLELKNWQLQ AEFQNVIDSL STLGKPSSLS ASVSWNPMKG EEQEPSFVLA FNSDSPHLNS
201: SKIWEFDEAH NRWLAVAELA LPEDKGDPVY ALSWAPNIGR PYEVVAVATH KGIGIWHVGL APDLEGRLPV KKVSSLSGHQ GEVWQMEWDM SGMTLASTGS
301: DGMVKLWQSN LNGEWHEQAT LEPVPS

Arabidopsis Description

SEH1Protein SEH1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VR9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.