Factsheet for Os03t0831800-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
endoplasmic reticulum 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 27992503

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G490200.1	Wheat	cytosol	83.06	78.86
TraesCS2B01G518500.1	Wheat	cytosol, golgi	82.72	78.55
HORVU2Hr1G109500.1	Barley	cytosol	82.39	78.23
TraesCS2D01G490600.1	Wheat	cytosol, golgi	82.39	78.23
Os02t0135800-02	Rice	cytosol	64.12	63.28
Os01t0620100-01	Rice	nucleus	19.93	18.52

Protein Annotations

Gene3D:2.130.10.10	MapMan:22.4.1.1	EntrezGene:4334673	ProteinID:AAO39855.1	ProteinID:AAP46251.1	ProteinID:ABF99713.1
ProteinID:ABF99714.1	EMBL:AK103569	ProteinID:BAF13711.1	ProteinID:BAS87209.1	ProteinID:EAZ29179.1	GO:GO:0003674
GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlantsGene:Os03g0831800	EnsemblPlants:Os03t0831800-01	PFAM:PF00400
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR11024	PANTHER:PTHR11024:SF9	UniProt:Q851A2	SMART:SM00320
SUPFAM:SSF50978	InterPro:Sec13/Seh1_fam	UniParc:UPI0000002CC8	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	RefSeq:XP_015632397.1	:	:	:	:

Description

OsWD40-95Similar to Sec13p. (Os03t0831800-01)

Coordinates

chr3:+:34939314..34941365

Molecular Weight (calculated)

32073.7 Da

IEP (calculated)

5.536

GRAVY (calculated)

-0.029

Length

301 amino acids

Sequence
(BLAST)

001: MSSNKIELDH KDMVHDSAID YYGKSLATAS SDSTVQISSI GGASAPSQLL ATLSGHYGPV WRVAWAHPKF GSILASCGYD GRVVVWKEGA AGQWSQAHVF
101: DNHKSSLNSI AWAPYELGLC LACGSSDGSI SVMTMRPDGG WDSTTIEQAH PVGVMAVSWA PATALGSIVG SGELVQKLVS GGFDCVVKVW AFVNGSWKLD
201: SVLPSDMHTD CVRDVSWAPV LGLAKFTIAS ASEDGKVVIW TKGKEGDKWE GKVMHDFEAP AWRVSWSLTG NILSVAAGSG DITLWKEASD GQWEKVTKVE
301: P

Best Arabidopsis Sequence Match ( AT2G30050.1 )
(BLAST)

001: MPGQKIETGH EDIVHDVQMD YYGKRIATAS SDCTIKITGV SNNGGSQQLA TLTGHRGPVW EVAWAHPKYG SILASCSYDG QVILWKEGNQ NQWTQDHVFT
101: DHKSSVNSIA WAPHDIGLSL ACGSSDGNIS VFTARADGGW DTSRIDQAHP VGVTSVSWAP ATAPGALVSS GLLDPVYKLA SGGCDNTVKV WKLANGSWKM
201: DCFPALQKHT DWVRDVAWAP NLGLPKSTIA SGSQDGKVII WTVGKEGEQW EGKVLKDFMT PVWRVSWSLT GNLLAVSDGN NNVTVWKEAV DGEWEQVTAV
301: EP

Arabidopsis Description

SEC13BProtein transport protein SEC13 homolog B [Source:UniProtKB/Swiss-Prot;Acc:O64740]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.