Factsheet for Os02t0135800-02

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
endoplasmic reticulum 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0725400-01
Os04t0654700-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30050.1	Os04t0654700-02	AT1G22920.1	21798944
AT3G01340.1	Os01t0725400-01	AT3G16300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G044700.1	Wheat	cytosol	93.77	95.02
EES00059	Sorghum	cytosol	94.75	94.75
TraesCS1A01G044200.1	Wheat	cytosol	94.75	94.75
Zm00001d039365_P001	Maize	nucleus	94.43	94.43
HORVU3Hr1G027730.1	Barley	cytosol	94.43	94.43
TraesCS5A01G485600.1	Wheat	cytosol	94.43	94.43
TraesCS5B01G499200.1	Wheat	cytosol	94.43	94.43
TraesCS3D01G145000.1	Wheat	cytosol	94.1	94.1
Zm00001d008932_P001	Maize	extracellular	93.77	93.77
TraesCS1B01G057100.1	Wheat	cytosol	62.62	93.63
TraesCS3B01G162400.1	Wheat	cytosol	91.8	92.11
GSMUA_Achr7P26060_001	Banana	cytosol	84.59	85.43
GSMUA_Achr9P19430_001	Banana	cytosol	83.61	84.44
VIT_14s0066g02380.t01	Wine grape	cytosol	83.28	84.39
VIT_13s0106g00770.t01	Wine grape	cytosol	82.95	84.05
KRH46249	Soybean	endoplasmic reticulum, nucleus	81.97	83.06
KRH46229	Soybean	cytosol	81.64	82.72
KRG98707	Soybean	endoplasmic reticulum, nucleus	81.64	82.72
KRG98686	Soybean	endoplasmic reticulum, nucleus	81.31	82.39
VIT_19s0015g00810.t01	Wine grape	cytosol	81.97	81.97
Solyc02g087300.1.1	Tomato	extracellular, nucleus	80.66	81.46
PGSC0003DMT400003265	Potato	cytosol	80.66	81.46
AT2G30050.1	Thale cress	cytosol	79.34	80.13
CDY24035	Canola	cytosol	78.69	79.73
Bra022774.1-P	Field mustard	cytosol	78.36	79.4
CDX84863	Canola	cytosol	78.36	79.4
CDY37530	Canola	cytosol	78.03	78.81
CDY02025	Canola	cytosol	78.03	78.55
CDY49046	Canola	cytosol	77.7	78.48
Bra039126.1-P	Field mustard	cytosol	77.7	78.48
AT3G01340.1	Thale cress	cytosol	76.39	77.15
CDX97854	Canola	cytosol	75.74	76.74
PGSC0003DMT400006490	Potato	cytosol	75.08	76.08
Solyc03g120900.1.1	Tomato	cytosol	74.1	75.08
Bra018343.1-P	Field mustard	cytosol	77.7	64.93
CDY10705	Canola	cytosol	77.7	64.93
Os03t0831800-01	Rice	cytosol, plastid	63.28	64.12
GSMUA_Achr1P22590_001	Banana	plastid	83.28	60.05
GSMUA_Achr8P31110_001	Banana	cytosol	24.92	57.14
CDY29706	Canola	cytosol, plastid	76.07	33.62
Bra021603.1-P	Field mustard	plastid	76.07	33.53
Os01t0620100-01	Rice	nucleus	22.62	21.3

Protein Annotations

Gene3D:2.130.10.10	MapMan:22.4.1.1	EntrezGene:4328228	EMBL:AK111732	EMBL:AK112028	ProteinID:BAD10362.1
ProteinID:BAF07734.1	ProteinID:BAS76861.1	ProteinID:EAZ21659.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000139	GO:GO:0003674
GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	GO:GO:0015031	GO:GO:0016020	GO:GO:0016043	GO:GO:0016192	GO:GO:0030127
GO:GO:0090114	GO:GO:1904263	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlantsGene:Os02g0135800
EnsemblPlants:Os02t0135800-02	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR11024
PANTHER:PTHR11024:SF2	UniProt:Q6Z0Y9	SMART:SM00320	SUPFAM:SSF50978	InterPro:Sec13	InterPro:Sec13/Seh1_fam
UniParc:UPI00000A7FA2	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_015622606.1
RefSeq:XP_015622607.1	:	:	:	:	:

Description

OsWD40-36Similar to Sec13-like protein (Fragment). (Os02t0135800-01);Similar to Sec13-like protein (Fragment). (Os02t0135800-02);Similar to Sec13p. (Os02t0135800-03)

Coordinates

chr2:+:1903004..1905124

Molecular Weight (calculated)

33371.0 Da

IEP (calculated)

5.931

GRAVY (calculated)

-0.290

Length

305 amino acids

Sequence
(BLAST)

001: MPPHKIETGH QDVVHDIAMD YYGKRIATAS SDNTIKIIGV SGNSHQQLAT LSGHQGPVWQ VAWAHPKYGS LLASCSYDGR VIIWKEGSKP DEWAQAHTFI
101: EHKSSVNSIA WAPHELGLCL ACGSSDGNIS VFTARSDGGW DTTRIDQAHP VGVTSVSWAP AMAPGALINT GPSGQFEYVQ KLASGGCDNT VKVWKLYNGS
201: WRMDCFPALQ MHRDWVRDVA WAPNLGLPKS TIASASQDGT VVIWTAPKEG EQWEGRVLYD FQTPVWRLSW SLTGNILAVS DGNDNVTLWK EAVDGEWQQV
301: TTVEA

Best Arabidopsis Sequence Match ( AT2G30050.1 )
(BLAST)

001: MPGQKIETGH EDIVHDVQMD YYGKRIATAS SDCTIKITGV SNNGGSQQLA TLTGHRGPVW EVAWAHPKYG SILASCSYDG QVILWKEGNQ NQWTQDHVFT
101: DHKSSVNSIA WAPHDIGLSL ACGSSDGNIS VFTARADGGW DTSRIDQAHP VGVTSVSWAP ATAPGALVSS GLLDPVYKLA SGGCDNTVKV WKLANGSWKM
201: DCFPALQKHT DWVRDVAWAP NLGLPKSTIA SGSQDGKVII WTVGKEGEQW EGKVLKDFMT PVWRVSWSLT GNLLAVSDGN NNVTVWKEAV DGEWEQVTAV
301: EP

Arabidopsis Description

SEC13BProtein transport protein SEC13 homolog B [Source:UniProtKB/Swiss-Prot;Acc:O64740]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.