CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
endoplasmic reticulum 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG27287
KXG33291

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30050.1	KXG27287	AT1G22920.1	21798944
AT3G01340.1	KXG33291	AT3G16300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039365_P001	Maize	nucleus	98.36	98.36
Zm00001d008932_P001	Maize	extracellular	98.36	98.36
Os02t0135800-02	Rice	cytosol	94.75	94.75
TraesCS5A01G485600.1	Wheat	cytosol	94.43	94.43
HORVU3Hr1G027730.1	Barley	cytosol	94.1	94.1
TraesCS5B01G499200.1	Wheat	cytosol	94.1	94.1
TraesCS1D01G044700.1	Wheat	cytosol	92.79	94.02
TraesCS3D01G145000.1	Wheat	cytosol	93.77	93.77
TraesCS1A01G044200.1	Wheat	cytosol	93.77	93.77
TraesCS1B01G057100.1	Wheat	cytosol	61.64	92.16
TraesCS3B01G162400.1	Wheat	cytosol	91.8	92.11
GSMUA_Achr7P26060_001	Banana	cytosol	85.57	86.42
GSMUA_Achr9P19430_001	Banana	cytosol	84.26	85.1
VIT_14s0066g02380.t01	Wine grape	cytosol	83.61	84.72
VIT_13s0106g00770.t01	Wine grape	cytosol	83.28	84.39
KRH46249	Soybean	endoplasmic reticulum, nucleus	83.28	84.39
KRH46229	Soybean	cytosol	82.95	84.05
KRG98707	Soybean	endoplasmic reticulum, nucleus	82.95	84.05
OQU89582	Sorghum	cytosol	89.18	83.95
KRG98686	Soybean	endoplasmic reticulum, nucleus	82.3	83.39
VIT_19s0015g00810.t01	Wine grape	cytosol	81.97	81.97
PGSC0003DMT400003265	Potato	cytosol	80.66	81.46
Solyc02g087300.1.1	Tomato	extracellular, nucleus	80.66	81.46
AT2G30050.1	Thale cress	cytosol	79.34	80.13
CDY24035	Canola	cytosol	79.02	80.07
Bra022774.1-P	Field mustard	cytosol	78.69	79.73
CDX84863	Canola	cytosol	78.69	79.73
CDY02025	Canola	cytosol	79.02	79.54
CDY37530	Canola	cytosol	78.03	78.81
Bra039126.1-P	Field mustard	cytosol	77.7	78.48
CDY49046	Canola	cytosol	77.38	78.15
AT3G01340.1	Thale cress	cytosol	76.72	77.48
CDX97854	Canola	cytosol	76.39	77.41
PGSC0003DMT400006490	Potato	cytosol	75.74	76.74
Solyc03g120900.1.1	Tomato	cytosol	74.75	75.75
CDY10705	Canola	cytosol	78.36	65.48
Bra018343.1-P	Field mustard	cytosol	78.36	65.48
EER96133	Sorghum	cytosol	61.97	63.21
GSMUA_Achr1P22590_001	Banana	plastid	83.93	60.52
GSMUA_Achr8P31110_001	Banana	cytosol	24.26	55.64
CDY29706	Canola	cytosol, plastid	76.72	33.91
Bra021603.1-P	Field mustard	plastid	76.72	33.81
EES03291	Sorghum	cytosol	23.61	22.22

Protein Annotations

Gene3D:2.130.10.10	MapMan:22.4.1.1	EntrezGene:8081406	UniProt:C5XL07	EnsemblPlants:EES00059	ProteinID:EES00059
ProteinID:EES00059.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000139	GO:GO:0003674	GO:GO:0005198	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0015031
GO:GO:0016020	GO:GO:0016043	GO:GO:0016192	GO:GO:0030127	GO:GO:0090114	GO:GO:1904263
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR11024	PANTHER:PTHR11024:SF2	SMART:SM00320	EnsemblPlantsGene:SORBI_3003G021200	SUPFAM:SSF50978
unigene:Sbi.18282	InterPro:Sec13	InterPro:Sec13/Seh1_fam	UniParc:UPI0001A84A54	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002454939.1	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:1812079..1814801

Molecular Weight (calculated)

33198.9 Da

IEP (calculated)

6.114

GRAVY (calculated)

-0.248

Length

305 amino acids

Sequence
(BLAST)

001: MPPHKIETGH QDVVHDIAMD YYGKRLATAS SDNTIKIIGV SGNSHQQLAT LSGHQGPVWQ VAWAHPKFGS MLASCSYDGR VIIWKEGSKP DEWALVHTFA
101: EHKSSVNSIA WAPHELGLCL ACGSSDGNIS VFTARSDGGW DTTRIDQAHP VGVTSVSWAP AMAPGALISA GSSGQFEYVQ KLASGGCDNT VKVWKLNNGS
201: WRMDCFPALQ MHKDWVRDVA WAPNLGLPKS TIASASQDGT VVIWTAAKEG EQWEGQVLYD FRTPVWRLSW SLTGNILAVS DGNNNVTLWK EAVDGEWQQV
301: TTVEP

Best Arabidopsis Sequence Match ( AT2G30050.1 )
(BLAST)

001: MPGQKIETGH EDIVHDVQMD YYGKRIATAS SDCTIKITGV SNNGGSQQLA TLTGHRGPVW EVAWAHPKYG SILASCSYDG QVILWKEGNQ NQWTQDHVFT
101: DHKSSVNSIA WAPHDIGLSL ACGSSDGNIS VFTARADGGW DTSRIDQAHP VGVTSVSWAP ATAPGALVSS GLLDPVYKLA SGGCDNTVKV WKLANGSWKM
201: DCFPALQKHT DWVRDVAWAP NLGLPKSTIA SGSQDGKVII WTVGKEGEQW EGKVLKDFMT PVWRVSWSLT GNLLAVSDGN NNVTVWKEAV DGEWEQVTAV
301: EP

Arabidopsis Description

SEC13BProtein transport protein SEC13 homolog B [Source:UniProtKB/Swiss-Prot;Acc:O64740]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.