CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
endoplasmic reticulum 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005461_P001	Maize	cytosol, nucleus	93.31	88.85
Zm00001d019287_P001	Maize	cytosol, extracellular	94.98	86.32
EES00059	Sorghum	cytosol	63.21	61.97
OQU89582	Sorghum	cytosol	61.87	57.1
EES03291	Sorghum	cytosol	21.74	20.06

Protein Annotations

Gene3D:2.130.10.10	MapMan:22.4.1.1	UniProt:C5X218	EnsemblPlants:EER96133	ProteinID:EER96133	ProteinID:EER96133.2
GO:GO:0003674	GO:GO:0003824	GO:GO:0003964	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515
GO:GO:0006139	GO:GO:0006259	GO:GO:0006278	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015031	GO:GO:0016740	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR11024	PANTHER:PTHR11024:SF9
SMART:SM00320	EnsemblPlantsGene:SORBI_3002G090700	SUPFAM:SSF50978	InterPro:Sec13/Seh1_fam	UniParc:UPI0001FCC9E9	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:9467017..9470940

Molecular Weight (calculated)

32036.8 Da

IEP (calculated)

6.624

GRAVY (calculated)

-0.070

Length

299 amino acids

Sequence
(BLAST)

001: MSSKKIELDH KDIVHDSAID YYGKRLATAS SDSTVKIVNI GAANAPSQVL ATLSGHCGPV WRVAWAHPKY GAILASCSYD GRVIIWKEDA RGNWSQAHVF
101: SDQKASVNSI AWAPYEVGLC LACASSGGRI SILTMRADGG WDTSTIERAH PVGATAISWA PATASLAGAG ELVYKLVSGG FDSVVKVWGF NDGSWKLEGA
201: LISDMHTDCV RDVAWAPVLG LAKSTIASGS QDGKVVIWTK AKDGDKWEGK LMRDFGAPVW RVSWSLTGNI LSIAAGENNI TLWKEGSDGQ WEEVMKVEP

Best Arabidopsis Sequence Match ( AT2G30050.1 )
(BLAST)

001: MPGQKIETGH EDIVHDVQMD YYGKRIATAS SDCTIKITGV SNNGGSQQLA TLTGHRGPVW EVAWAHPKYG SILASCSYDG QVILWKEGNQ NQWTQDHVFT
101: DHKSSVNSIA WAPHDIGLSL ACGSSDGNIS VFTARADGGW DTSRIDQAHP VGVTSVSWAP ATAPGALVSS GLLDPVYKLA SGGCDNTVKV WKLANGSWKM
201: DCFPALQKHT DWVRDVAWAP NLGLPKSTIA SGSQDGKVII WTVGKEGEQW EGKVLKDFMT PVWRVSWSLT GNLLAVSDGN NNVTVWKEAV DGEWEQVTAV
301: EP

Arabidopsis Description

SEC13BProtein transport protein SEC13 homolog B [Source:UniProtKB/Swiss-Prot;Acc:O64740]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.