Factsheet for Zm00001d005461_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 24677780

msms PMID: 24677780 doi

B Guo, Y Chen, C Li, T Wang, R Wang, B Wang, S Hu, X Du, H Xing, X Song, Y Yao, Q Sun, Z Ni

State Key Laboratory for Agrobiotechnology, Key Laboratory of Crop Heterosis and Utilization (MOE), Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, China; National Plant Gene Research Centre (Beijing), Beijing, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96133	Sorghum	cytosol	88.85	93.31
Zm00001d019287_P001	Maize	cytosol, extracellular	93.63	89.36
Zm00001d008932_P001	Maize	extracellular	59.87	61.64
Zm00001d039365_P001	Maize	nucleus	58.92	60.66
Zm00001d044193_P002	Maize	peroxisome	21.66	21.05

Protein Annotations

Gene3D:2.130.10.10	MapMan:22.4.1.1	UniProt:A0A1D6EN44	GO:GO:0003674	GO:GO:0005198	GO:GO:0005488
GO:GO:0005515	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	ProteinID:ONM21228.1	PFAM:PF00400	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR11024
PANTHER:PTHR11024:SF9	SMART:SM00320	SUPFAM:SSF50978	InterPro:Sec13/Seh1_fam	UniParc:UPI0008449EFB	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d005461	EnsemblPlants:Zm00001d005461_P001	EnsemblPlants:Zm00001d005461_T001

Description

Protein transport protein SEC13 homolog B

Coordinates

chr2:-:175015114..175016058

Molecular Weight (calculated)

33984.1 Da

IEP (calculated)

6.869

GRAVY (calculated)

-0.139

Length

314 amino acids

Sequence
(BLAST)

001: MQTCEQGSSM VQFGNMSSKK IELDHKDMVH DSAIDYYGKR LATASSDSTV KIINIGAANA PSQVLATLSG HYGPVWRVAW AHPKYGAILA SCSYDGRVII
101: WKEDARGNWS QVHVFSDNKS SVNSIAWAPY EVGLCLACAS SGGRISILTM RADGGWDTAT IERAHPVGAT AISWAPATDS IAGTGEFVYK LVSGGFDSVV
201: KVWGFNNGSW KLESALISDM HTDCVRDVAW APVLGLAKST IASASQDGKV VIWTRGKDGD KWERKLMRDF GSPVWRVSWS LTGNILSIAA GGNNITLWKE
301: GSDGQWEEVM KVET

Best Arabidopsis Sequence Match ( AT2G30050.1 )
(BLAST)

001: MPGQKIETGH EDIVHDVQMD YYGKRIATAS SDCTIKITGV SNNGGSQQLA TLTGHRGPVW EVAWAHPKYG SILASCSYDG QVILWKEGNQ NQWTQDHVFT
101: DHKSSVNSIA WAPHDIGLSL ACGSSDGNIS VFTARADGGW DTSRIDQAHP VGVTSVSWAP ATAPGALVSS GLLDPVYKLA SGGCDNTVKV WKLANGSWKM
201: DCFPALQKHT DWVRDVAWAP NLGLPKSTIA SGSQDGKVII WTVGKEGEQW EGKVLKDFMT PVWRVSWSLT GNLLAVSDGN NNVTVWKEAV DGEWEQVTAV
301: EP

Arabidopsis Description

SEC13BProtein transport protein SEC13 homolog B [Source:UniProtKB/Swiss-Prot;Acc:O64740]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.