Factsheet for Zm00001d044193_P002

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

peroxisome 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	mitochondrion, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES03291	Sorghum	cytosol	95.05	94.75
Os01t0620100-01	Rice	nucleus	85.76	85.49
HORVU3Hr1G055410.2	Barley	cytosol	82.35	82.35
TraesCS3A01G223900.1	Wheat	cytosol	82.35	82.35
TraesCS3B01G253300.1	Wheat	cytosol	82.04	82.04
TraesCS3D01G229700.1	Wheat	cytosol	82.04	82.04
GSMUA_Achr2P06320_001	Banana	cytosol	64.09	62.73
VIT_02s0025g01250.t01	Wine grape	cytosol	60.99	60.62
KRH27852	Soybean	cytosol, nucleus	59.13	58.59
Solyc08g082100.2.1	Tomato	nucleus	58.51	58.15
KRH77634	Soybean	cytosol, nucleus	58.2	57.67
AT1G64350.1	Thale cress	plastid	55.73	55.21
Bra027738.1-P	Field mustard	plastid	55.42	54.57
CDY08370	Canola	plastid	55.42	54.57
PGSC0003DMT400032040	Potato	cytosol	57.89	51.52
CDY47852	Canola	cytosol	56.04	49.86
Zm00001d008932_P001	Maize	extracellular	22.6	23.93
Zm00001d039365_P001	Maize	nucleus	22.29	23.61
Zm00001d005461_P001	Maize	cytosol, nucleus	21.05	21.66
Zm00001d019287_P001	Maize	cytosol, extracellular	20.74	20.36

Protein Annotations

EntrezGene:100284280	Gene3D:2.130.10.10	MapMan:23.5.1.1.1.7	UniProt:B6TS03	EMBL:EU967768	GO:GO:0003674
GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005635	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	GO:GO:0015031	GO:GO:1904263	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
InterPro:Nucleoporin_Seh1	ProteinID:ONM40394.1	PFAM:PF00400	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR11024
PANTHER:PTHR11024:SF3	SMART:SM00320	SUPFAM:SSF50978	InterPro:Sec13/Seh1_fam	UniParc:UPI000182E4A1	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d044193	EnsemblPlants:Zm00001d044193_P002	EnsemblPlants:Zm00001d044193_T002

Description

Seh1-like protein

Coordinates

chr3:+:221614693..221628450

Molecular Weight (calculated)

35186.2 Da

IEP (calculated)

4.479

GRAVY (calculated)

-0.174

Length

323 amino acids

Sequence
(BLAST)

001: MTERQVAELG PGTACCGWNH CGRRLAAGAV DGSVSVYDSQ PPPSFKWQAH EQAIVNVVWL PPEYGDAIAC VCADGTLSLW EEVAADDQLP TWRNCKIFED
101: GNSHILNVHF GLHLGILKMV TAYSDGQVKV YELLDSLELD KWQLQAEFQN ITDPISRFGK PACTSASIAW NPRRGGSQQA SFAIGFNSDS PHFNSCKIWE
201: FEEAHQRWLP LVELGSPEDT GDKVCAVAWA PNIGRPYEII AVATCKGIAI WHIGLNADAD GGPSTQNVAL LNGHDGEVWQ LEWDMGGMTL ASTGGDGMVK
301: LWQANLDGVW HEQAVLDCSG SHV

Best Arabidopsis Sequence Match ( AT1G64350.1 )
(BLAST)

001: MAKSMATLDS GTTCSSWNQS GDRLAAGSLN GKLSIYESST SSSSTFSCTS KVRVSESSIV KIVWLPSEYG DAVACVCEDG SLSIWEELSE DAHGLEWKLC
101: KSMKNKSSQV LDVQFGVSRK SLKMVAAYSD GYLRVFELLN PLELKNWQLQ AEFQNVIDSL STLGKPSSLS ASVSWNPMKG EEQEPSFVLA FNSDSPHLNS
201: SKIWEFDEAH NRWLAVAELA LPEDKGDPVY ALSWAPNIGR PYEVVAVATH KGIGIWHVGL APDLEGRLPV KKVSSLSGHQ GEVWQMEWDM SGMTLASTGS
301: DGMVKLWQSN LNGEWHEQAT LEPVPS

Arabidopsis Description

SEH1Protein SEH1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VR9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.