Factsheet for HORVU3Hr1G055410.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G229700.1	Wheat	cytosol	96.28	96.28
TraesCS3B01G253300.1	Wheat	cytosol	96.28	96.28
TraesCS3A01G223900.1	Wheat	cytosol	96.28	96.28
Os01t0620100-01	Rice	nucleus	84.83	84.57
Zm00001d044193_P002	Maize	peroxisome	82.35	82.35
EES03291	Sorghum	cytosol	82.04	81.79
GSMUA_Achr2P06320_001	Banana	cytosol	65.94	64.55
VIT_02s0025g01250.t01	Wine grape	cytosol	60.37	60.0
Solyc08g082100.2.1	Tomato	nucleus	59.13	58.77
KRH77634	Soybean	cytosol, nucleus	56.97	56.44
KRH27852	Soybean	cytosol, nucleus	56.97	56.44
AT1G64350.1	Thale cress	plastid	55.73	55.21
Bra027738.1-P	Field mustard	plastid	55.42	54.57
CDY08370	Canola	plastid	54.49	53.66
PGSC0003DMT400032040	Potato	cytosol	58.51	52.07
CDY47852	Canola	cytosol	55.42	49.31
HORVU3Hr1G027730.1	Barley	cytosol	21.36	22.62
HORVU2Hr1G109500.1	Barley	cytosol	20.12	20.5

Protein Annotations

Gene3D:2.130.10.10	MapMan:23.5.1.1.1.7	EMBL:AK377154	UniProt:F2ELX6	GO:GO:0003674	GO:GO:0005198
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005635	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987
GO:GO:0015031	GO:GO:1904263	EnsemblPlantsGene:HORVU3Hr1G055410	EnsemblPlants:HORVU3Hr1G055410.2	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	InterPro:Nucleoporin_Seh1	PFAM:PF00400	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR11024
PANTHER:PTHR11024:SF3	SMART:SM00320	SUPFAM:SSF50978	InterPro:Sec13/Seh1_fam	UniParc:UPI000200909E	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2ELX6]

Coordinates

chrchr3H:+:411027587..411031856

Molecular Weight (calculated)

35261.6 Da

IEP (calculated)

4.671

GRAVY (calculated)

-0.140

Length

323 amino acids

Sequence
(BLAST)

001: MADQKVAQLG PGAACCGWNH CGRRLAAGAV DGSVSVYDSQ PSPSSKWQAH EHAVVAVVWL PPDYGDAIAC VCADGTLSLW EEIAEDDQLP IWRKCKFFEG
101: GSSHILNVQF GLLLSSLKMV VAYSDGQVKV YELLDSLELD KWQLQAELQN ITDPVSRIGK PACISASIAW SPRRGEGQQA SFAIGFSSDS PNFNSCKIWE
201: FEEAHQRWLP VIELGSPEDK GERVHAVAWA PNIGRPYEMI AVATCKGIAV WRVGFNLESD GRLSTENVAV LPGHNGEVWQ LEWDMGGMTL ASTGVDGMVK
301: LWQANLNGVW HEQAVLDCNG SHQ

Best Arabidopsis Sequence Match ( AT1G64350.1 )
(BLAST)

001: MAKSMATLDS GTTCSSWNQS GDRLAAGSLN GKLSIYESST SSSSTFSCTS KVRVSESSIV KIVWLPSEYG DAVACVCEDG SLSIWEELSE DAHGLEWKLC
101: KSMKNKSSQV LDVQFGVSRK SLKMVAAYSD GYLRVFELLN PLELKNWQLQ AEFQNVIDSL STLGKPSSLS ASVSWNPMKG EEQEPSFVLA FNSDSPHLNS
201: SKIWEFDEAH NRWLAVAELA LPEDKGDPVY ALSWAPNIGR PYEVVAVATH KGIGIWHVGL APDLEGRLPV KKVSSLSGHQ GEVWQMEWDM SGMTLASTGS
301: DGMVKLWQSN LNGEWHEQAT LEPVPS

Arabidopsis Description

SEH1Protein SEH1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VR9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.