Factsheet for VIT_02s0025g01250.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27852	Soybean	cytosol, nucleus	74.77	74.54
KRH77634	Soybean	cytosol, nucleus	74.77	74.54
Solyc08g082100.2.1	Tomato	nucleus	73.85	73.85
AT1G64350.1	Thale cress	plastid	67.08	66.87
Bra027738.1-P	Field mustard	plastid	67.08	66.46
CDY08370	Canola	plastid	67.08	66.46
PGSC0003DMT400032040	Potato	cytosol	73.85	66.12
GSMUA_Achr2P06320_001	Banana	cytosol	65.23	64.24
Os01t0620100-01	Rice	nucleus	60.92	61.11
Zm00001d044193_P002	Maize	peroxisome	60.62	60.99
EES03291	Sorghum	cytosol	60.62	60.8
HORVU3Hr1G055410.2	Barley	cytosol	60.0	60.37
TraesCS3A01G223900.1	Wheat	cytosol	60.0	60.37
TraesCS3B01G253300.1	Wheat	cytosol	59.69	60.06
CDY47852	Canola	cytosol	66.77	59.78
TraesCS3D01G229700.1	Wheat	cytosol	59.38	59.75
VIT_14s0066g02380.t01	Wine grape	cytosol	22.77	24.58
VIT_13s0106g00770.t01	Wine grape	cytosol	22.46	24.25
VIT_19s0015g00810.t01	Wine grape	cytosol	22.46	23.93

Protein Annotations

EntrezGene:100263869	wikigene:100263869	Gene3D:2.130.10.10	MapMan:23.5.1.1.1.7	EMBL:AM453592	ProteinID:CAN61200
ProteinID:CAN61200.1	ProteinID:CBI34464	ProteinID:CBI34464.3	UniProt:D7TVD9	EMBL:FN596251	GO:GO:0003674
GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009987	GO:GO:0015031	GO:GO:1904263	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	EntrezGene:LOC100263869	wikigene:LOC100263869	InterPro:Nucleoporin_Seh1	PFAM:PF00400	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR11024	PANTHER:PTHR11024:SF3	SMART:SM00320	SUPFAM:SSF50978	InterPro:Sec13/Seh1_fam
UniParc:UPI00015CCBE1	ArrayExpress:VIT_02s0025g01250	EnsemblPlantsGene:VIT_02s0025g01250	EnsemblPlants:VIT_02s0025g01250.t01	unigene:Vvi.19469	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002270960	RefSeq:XP_002270960.2	RefSeq:XP_019072063.1

Description

No Description!

Coordinates

chr2:+:1211771..1218329

Molecular Weight (calculated)

35640.6 Da

IEP (calculated)

4.480

GRAVY (calculated)

-0.220

Length

325 amino acids

Sequence
(BLAST)

001: MEKSLVTLDN GTTCSSWNYN GERLATGSVD GTLAIFDSID PASSSFTCTS RSRVHEDSVV KVVWVPPEYG DAVGCICADG TLSLWEEVVE DAQPLQWKLC
101: KSFGSNSNKV LDVQFGVSPT SLKMVSAYSD GHVKVYELLD PLELKSWQLQ AEFQNASDSV STFGKALCLS ASVSWNPQRG ESQQSSFVLG FHSDTPQLNS
201: AKVWEFDQNH QRWLPVAELA LHGDKGDQVF TVAWAPNIGR PYEVMAVATH KGIAIWHLGL NPDIDGRLSV ERVALLSGHD GEVWQMEWDM SGMTLATTGG
301: DGMVRLWQSN LNGVWHEQAA LEPTS

Best Arabidopsis Sequence Match ( AT1G64350.1 )
(BLAST)

001: MAKSMATLDS GTTCSSWNQS GDRLAAGSLN GKLSIYESST SSSSTFSCTS KVRVSESSIV KIVWLPSEYG DAVACVCEDG SLSIWEELSE DAHGLEWKLC
101: KSMKNKSSQV LDVQFGVSRK SLKMVAAYSD GYLRVFELLN PLELKNWQLQ AEFQNVIDSL STLGKPSSLS ASVSWNPMKG EEQEPSFVLA FNSDSPHLNS
201: SKIWEFDEAH NRWLAVAELA LPEDKGDPVY ALSWAPNIGR PYEVVAVATH KGIGIWHVGL APDLEGRLPV KKVSSLSGHQ GEVWQMEWDM SGMTLASTGS
301: DGMVKLWQSN LNGEWHEQAT LEPVPS

Arabidopsis Description

SEH1Protein SEH1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VR9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.