Factsheet for VIT_13s0106g00770.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
endoplasmic reticulum 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g04360.t01
VIT_09s0002g03780.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30050.1	VIT_03s0038g04360.t01	AT1G22920.1	21798944
AT3G01340.1	VIT_09s0002g03780.t01	AT3G16300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0066g02380.t01	Wine grape	cytosol	98.01	98.01
VIT_19s0015g00810.t01	Wine grape	cytosol	98.01	96.72
PGSC0003DMT400003265	Potato	cytosol	89.37	89.07
Solyc02g087300.1.1	Tomato	extracellular, nucleus	89.04	88.74
GSMUA_Achr9P19430_001	Banana	cytosol	86.05	85.76
GSMUA_Achr7P26060_001	Banana	cytosol	86.05	85.76
CDY02025	Canola	cytosol	86.05	85.48
CDY24035	Canola	cytosol	85.05	85.05
Bra022774.1-P	Field mustard	cytosol	84.72	84.72
CDX84863	Canola	cytosol	84.72	84.72
AT2G30050.1	Thale cress	cytosol	84.72	84.44
EES00059	Sorghum	cytosol	84.39	83.28
CDX97854	Canola	cytosol	83.06	83.06
TraesCS5B01G499200.1	Wheat	cytosol	84.05	82.95
Os02t0135800-02	Rice	cytosol	84.05	82.95
TraesCS3D01G145000.1	Wheat	cytosol	83.72	82.62
Zm00001d008932_P001	Maize	extracellular	83.72	82.62
Zm00001d039365_P001	Maize	nucleus	83.72	82.62
AT3G01340.1	Thale cress	cytosol	82.72	82.45
HORVU3Hr1G027730.1	Barley	cytosol	83.39	82.3
TraesCS5A01G485600.1	Wheat	cytosol	83.39	82.3
TraesCS1D01G044700.1	Wheat	cytosol	81.73	81.73
TraesCS1A01G044200.1	Wheat	cytosol	82.72	81.64
TraesCS3B01G162400.1	Wheat	cytosol	82.06	81.25
CDY49046	Canola	cytosol	81.06	80.79
CDY37530	Canola	cytosol	81.06	80.79
Bra039126.1-P	Field mustard	cytosol	81.06	80.79
TraesCS1B01G057100.1	Wheat	cytosol	52.82	77.94
OQU89582	Sorghum	cytosol	80.07	74.38
CDY10705	Canola	cytosol	84.72	69.86
Bra018343.1-P	Field mustard	cytosol	84.72	69.86
GSMUA_Achr1P22590_001	Banana	plastid	85.05	60.52
GSMUA_Achr8P31110_001	Banana	cytosol	24.92	56.39
CDY29706	Canola	cytosol, plastid	83.06	36.23
Bra021603.1-P	Field mustard	plastid	82.72	35.98
VIT_02s0025g01250.t01	Wine grape	cytosol	24.25	22.46

Protein Annotations

EntrezGene:100261919	wikigene:100261919	Gene3D:2.130.10.10	MapMan:22.4.1.1	EMBL:AM445906	EMBL:AM467026
ProteinID:CAN80755	ProteinID:CAN80755.1	ProteinID:CAN81348	ProteinID:CAN81348.1	ProteinID:CCB58770	ProteinID:CCB58770.1
UniProt:F6HVQ7	EMBL:FN596257	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000139	GO:GO:0003674	GO:GO:0005198
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987
GO:GO:0015031	GO:GO:0016020	GO:GO:0016043	GO:GO:0016192	GO:GO:0030127	GO:GO:0090114
GO:GO:1904263	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EntrezGene:LOC100261919	wikigene:LOC100261919
PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR11024	PANTHER:PTHR11024:SF2
SMART:SM00320	SUPFAM:SSF50978	InterPro:Sec13	InterPro:Sec13/Seh1_fam	UniParc:UPI00015CC746	ArrayExpress:VIT_13s0106g00770
EnsemblPlantsGene:VIT_13s0106g00770	EnsemblPlants:VIT_13s0106g00770.t01	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
RefSeq:XP_002265971	RefSeq:XP_002265971.1	:	:	:	:

Description

No Description!

Coordinates

chr13:-:10613258..10614250

Molecular Weight (calculated)

32623.3 Da

IEP (calculated)

6.502

GRAVY (calculated)

-0.203

Length

301 amino acids

Sequence
(BLAST)

001: MPSQKIKTGH QDTVHDVAMD YYGKRVATAS SDSTIKIIGV SNNASQHLAT LTGHQGPVWQ VAWAHPKFGS ILASCSCDGR VIIWKEGNQN EWTQAHVFSD
101: HKSSVNSIAW APHELGLCLA CGSSDGNISV FTARSDGTWD TTKIDQAHPV GVTSVSWAPS MAPGALVGSG LLDLVQKLVS GGCDNTVKVW KLYNGNWKMD
201: CFPALQMHTD WVRDVAWAPN LGLPKSTIAS ASQDGTVVIW TVAKEGDQWE GKVLKDFKTP VWRVSWSLTG NLLAVADGNN NVTLWKEAVD GEWQQVTTVD
301: P

Best Arabidopsis Sequence Match ( AT2G30050.1 )
(BLAST)

001: MPGQKIETGH EDIVHDVQMD YYGKRIATAS SDCTIKITGV SNNGGSQQLA TLTGHRGPVW EVAWAHPKYG SILASCSYDG QVILWKEGNQ NQWTQDHVFT
101: DHKSSVNSIA WAPHDIGLSL ACGSSDGNIS VFTARADGGW DTSRIDQAHP VGVTSVSWAP ATAPGALVSS GLLDPVYKLA SGGCDNTVKV WKLANGSWKM
201: DCFPALQKHT DWVRDVAWAP NLGLPKSTIA SGSQDGKVII WTVGKEGEQW EGKVLKDFMT PVWRVSWSLT GNLLAVSDGN NNVTVWKEAV DGEWEQVTAV
301: EP

Arabidopsis Description

SEC13BProtein transport protein SEC13 homolog B [Source:UniProtKB/Swiss-Prot;Acc:O64740]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.