Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- endoplasmic reticulum 1
- cytosol 2
- mitochondrion 1
- plastid 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | |
| GSMUA_Achr4P08280_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G30050.1 | GSMUA_Achr10P... | AT1G22920.1 | 21798944 |
| AT3G01340.1 | GSMUA_Achr4P08280_001 | AT3G16300.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G057100.1 | Wheat | cytosol | 48.12 | 31.37 |
| GSMUA_Achr9P19430_001 | Banana | cytosol | 60.9 | 26.82 |
| GSMUA_Achr7P26060_001 | Banana | cytosol | 59.4 | 26.16 |
| VIT_14s0066g02380.t01 | Wine grape | cytosol | 57.14 | 25.25 |
| TraesCS5B01G499200.1 | Wheat | cytosol | 57.89 | 25.25 |
| TraesCS5A01G485600.1 | Wheat | cytosol | 57.14 | 24.92 |
| TraesCS3D01G145000.1 | Wheat | cytosol | 57.14 | 24.92 |
| Os02t0135800-02 | Rice | cytosol | 57.14 | 24.92 |
| VIT_13s0106g00770.t01 | Wine grape | cytosol | 56.39 | 24.92 |
| Zm00001d039365_P001 | Maize | nucleus | 56.39 | 24.59 |
| Zm00001d008932_P001 | Maize | extracellular | 55.64 | 24.26 |
| HORVU3Hr1G027730.1 | Barley | cytosol | 55.64 | 24.26 |
| EES00059 | Sorghum | cytosol | 55.64 | 24.26 |
| KRH46249 | Soybean | endoplasmic reticulum, nucleus | 54.89 | 24.25 |
| KRH46229 | Soybean | cytosol | 54.89 | 24.25 |
| KRG98686 | Soybean | endoplasmic reticulum, nucleus | 54.89 | 24.25 |
| KRG98707 | Soybean | endoplasmic reticulum, nucleus | 54.89 | 24.25 |
| VIT_19s0015g00810.t01 | Wine grape | cytosol | 54.89 | 23.93 |
| TraesCS1A01G044200.1 | Wheat | cytosol | 54.89 | 23.93 |
| TraesCS1D01G044700.1 | Wheat | cytosol | 54.14 | 23.92 |
| TraesCS3B01G162400.1 | Wheat | cytosol | 54.14 | 23.68 |
| PGSC0003DMT400003265 | Potato | cytosol | 53.38 | 23.51 |
| Solyc02g087300.1.1 | Tomato | extracellular, nucleus | 52.63 | 23.18 |
| OQU89582 | Sorghum | cytosol | 55.64 | 22.84 |
| Solyc03g120900.1.1 | Tomato | cytosol | 51.13 | 22.59 |
| Bra022774.1-P | Field mustard | cytosol | 50.38 | 22.26 |
| CDY24035 | Canola | cytosol | 50.38 | 22.26 |
| PGSC0003DMT400006490 | Potato | cytosol | 50.38 | 22.26 |
| CDX84863 | Canola | cytosol | 50.38 | 22.26 |
| Bra039126.1-P | Field mustard | cytosol | 50.38 | 22.19 |
| CDY37530 | Canola | cytosol | 50.38 | 22.19 |
| CDY02025 | Canola | cytosol | 50.38 | 22.11 |
| CDX97854 | Canola | cytosol | 49.62 | 21.93 |
| AT2G30050.1 | Thale cress | cytosol | 49.62 | 21.85 |
| CDY49046 | Canola | cytosol | 49.62 | 21.85 |
| AT3G01340.1 | Thale cress | cytosol | 48.87 | 21.52 |
| GSMUA_Achr1P22590_001 | Banana | plastid | 60.9 | 19.15 |
| CDY10705 | Canola | cytosol | 48.87 | 17.81 |
| Bra018343.1-P | Field mustard | cytosol | 48.87 | 17.81 |
| Bra021603.1-P | Field mustard | plastid | 50.38 | 9.68 |
| CDY29706 | Canola | cytosol, plastid | 49.62 | 9.57 |
| GSMUA_Achr2P06320_001 | Banana | cytosol | 18.05 | 7.27 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | GO:GO:0000139 | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 |
| GO:GO:0006810 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016043 | GO:GO:0016192 | GO:GO:0030127 | GO:GO:0090114 | GO:GO:1904263 | EnsemblPlantsGene:GSMUA_Achr8G31110_001 |
| EnsemblPlants:GSMUA_Achr8P31110_001 | EnsemblPlants:GSMUA_Achr8T31110_001 | InterPro:IPR015943 | UniProt:M0TV63 | PANTHER:PTHR11024 | PANTHER:PTHR11024:SF2 |
| SUPFAM:SSF50978 | InterPro:Sec13 | InterPro:Sec13/Seh1_fam | UniParc:UPI000296C781 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat_dom_sf |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G31110_001]
Coordinates
chr8:+:32892329..32894669
Molecular Weight (calculated)
14594.5 Da
IEP (calculated)
6.782
GRAVY (calculated)
-0.136
Length
133 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSQKIETGH QDVVHDVARD YFGDRMATAS SDTTIKIIGV GSFSHQHLVI LSCHQGPVQF GRLHTVIASC NCDGRVIICK EGNKPDEWTQ AHVFTEQNSP
101: LPKSVTKLVP TPKLILHMLH DVATDSEGLL PIC
101: LPKSVTKLVP TPKLILHMLH DVATDSEGLL PIC
001: MPPQKIETGH SDTIHDVVMD YYGKRVATAS SDCTIKITGV SNSGGSQHLA TLTGHRGPVW QVAWAHPKFG SLLASCSYDG QIILWKEGNQ NQWTQAHVFT
101: DHKVSVNSIA WAPHELGLSL ACGASDGNIS VFSARADGGW DTTKIDQAHP VGVTSVSWAP ATEPGALVSS GMIDPVYKLA SGGCDSTVKV WKFSNGSWKM
201: DCFPALNKHT DWVRDVAWAP NLGLPKSTIA SGSEDGKVII WTIGKEGEQW EGTVLKDFKT PVWRVSWSLT GNLLAVSDGN NNVTVWKESV DGEWEQVTVV
301: EP
101: DHKVSVNSIA WAPHELGLSL ACGASDGNIS VFSARADGGW DTTKIDQAHP VGVTSVSWAP ATEPGALVSS GMIDPVYKLA SGGCDSTVKV WKFSNGSWKM
201: DCFPALNKHT DWVRDVAWAP NLGLPKSTIA SGSEDGKVII WTIGKEGEQW EGTVLKDFKT PVWRVSWSLT GNLLAVSDGN NNVTVWKESV DGEWEQVTVV
301: EP
Arabidopsis Description
SEC13AProtein transport protein SEC13 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9SRI1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.