Factsheet for Solyc03g120900.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
endoplasmic reticulum 1
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400006490	Potato	cytosol	96.35	96.35
KRG98707	Soybean	endoplasmic reticulum, nucleus	81.4	81.4
KRH46229	Soybean	cytosol	81.4	81.4
KRH46249	Soybean	endoplasmic reticulum, nucleus	81.4	81.4
KRG98686	Soybean	endoplasmic reticulum, nucleus	80.4	80.4
Solyc02g087300.1.1	Tomato	extracellular, nucleus	80.4	80.13
GSMUA_Achr7P26060_001	Banana	cytosol	77.08	76.82
GSMUA_Achr9P19430_001	Banana	cytosol	77.08	76.82
TraesCS5B01G499200.1	Wheat	cytosol	76.08	75.08
Zm00001d039365_P001	Maize	nucleus	75.75	74.75
EES00059	Sorghum	cytosol	75.75	74.75
HORVU3Hr1G027730.1	Barley	cytosol	75.42	74.43
TraesCS3D01G145000.1	Wheat	cytosol	75.42	74.43
Zm00001d008932_P001	Maize	extracellular	75.42	74.43
Os02t0135800-02	Rice	cytosol	75.08	74.1
TraesCS5A01G485600.1	Wheat	cytosol	75.08	74.1
TraesCS1A01G044200.1	Wheat	cytosol	74.42	73.44
TraesCS1D01G044700.1	Wheat	cytosol	73.42	73.42
TraesCS3B01G162400.1	Wheat	cytosol	74.09	73.36
TraesCS1B01G057100.1	Wheat	cytosol	47.51	70.1
OQU89582	Sorghum	cytosol	72.09	66.98
GSMUA_Achr1P22590_001	Banana	plastid	77.74	55.32
GSMUA_Achr8P31110_001	Banana	cytosol	22.59	51.13
Solyc08g082100.2.1	Tomato	nucleus	24.58	22.77

Protein Annotations

Gene3D:2.130.10.10	MapMan:22.4.1.1	InterPro:Apc4_WD40_dom	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000139	GO:GO:0003674
GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	GO:GO:0015031	GO:GO:0016020	GO:GO:0016043	GO:GO:0016192	GO:GO:0030127
GO:GO:0090114	GO:GO:1904263	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:K4BMN9
PFAM:PF00400	PFAM:PF12894	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR11024
PANTHER:PTHR11024:SF2	SMART:SM00320	SUPFAM:SSF50978	InterPro:Sec13	InterPro:Sec13/Seh1_fam	EnsemblPlantsGene:Solyc03g120900.1
EnsemblPlants:Solyc03g120900.1.1	UniParc:UPI0002766F4C	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf

Description

No Description!

Coordinates

chr3:-:69127669..69128574

Molecular Weight (calculated)

32465.0 Da

IEP (calculated)

5.088

GRAVY (calculated)

-0.125

Length

301 amino acids

Sequence
(BLAST)

001: MPSQKIESGH TDTVHDVAMD YYGKRLATAS SDCTIKITGV SNSSSQLLAT ISGHQGPVWQ VAWAHPKFGS LLASCSSDGK VIIWKEGTQN EWSLARVFDD
101: HKASVNAISW APHELGLCLA CGSSDGNISI FTARSEDVWE TSRIDQAHPV GVTSVSWAPS TAPGSLVGSD LLNSIPKLAS AGCDNTVKVW KMFDGTWKLD
201: CFPALQMHTD WVRDVAWAPN LGLPKSTIAS ASEDGRVIIW TVGKEGDQWI GKVLKDFGAP VWRVSWSLTG NILAVADGNN NVTLWNEAVD GEWQPVTTVD
301: T

Best Arabidopsis Sequence Match ( AT2G30050.1 )
(BLAST)

001: MPGQKIETGH EDIVHDVQMD YYGKRIATAS SDCTIKITGV SNNGGSQQLA TLTGHRGPVW EVAWAHPKYG SILASCSYDG QVILWKEGNQ NQWTQDHVFT
101: DHKSSVNSIA WAPHDIGLSL ACGSSDGNIS VFTARADGGW DTSRIDQAHP VGVTSVSWAP ATAPGALVSS GLLDPVYKLA SGGCDNTVKV WKLANGSWKM
201: DCFPALQKHT DWVRDVAWAP NLGLPKSTIA SGSQDGKVII WTVGKEGEQW EGKVLKDFMT PVWRVSWSLT GNLLAVSDGN NNVTVWKEAV DGEWEQVTAV
301: EP

Arabidopsis Description

SEC13BProtein transport protein SEC13 homolog B [Source:UniProtKB/Swiss-Prot;Acc:O64740]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.