CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, nucleus
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

nucleus: 21132161
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH46229	Soybean	cytosol	99.0	99.0
KRG98707	Soybean	endoplasmic reticulum, nucleus	98.34	98.34
KRG98686	Soybean	endoplasmic reticulum, nucleus	97.67	97.67
GSMUA_Achr7P26060_001	Banana	cytosol	85.71	85.43
GSMUA_Achr9P19430_001	Banana	cytosol	85.71	85.43
Zm00001d039365_P001	Maize	nucleus	84.39	83.28
Zm00001d008932_P001	Maize	extracellular	84.39	83.28
EES00059	Sorghum	cytosol	84.39	83.28
TraesCS5B01G499200.1	Wheat	cytosol	84.05	82.95
TraesCS3D01G145000.1	Wheat	cytosol	84.05	82.95
HORVU3Hr1G027730.1	Barley	cytosol	83.72	82.62
TraesCS5A01G485600.1	Wheat	cytosol	83.72	82.62
PGSC0003DMT400006490	Potato	cytosol	82.39	82.39
Os02t0135800-02	Rice	cytosol	83.06	81.97
TraesCS1D01G044700.1	Wheat	cytosol	81.73	81.73
TraesCS1A01G044200.1	Wheat	cytosol	82.72	81.64
TraesCS3B01G162400.1	Wheat	cytosol	82.39	81.58
Solyc03g120900.1.1	Tomato	cytosol	81.4	81.4
TraesCS1B01G057100.1	Wheat	cytosol	52.49	77.45
OQU89582	Sorghum	cytosol	80.07	74.38
GSMUA_Achr1P22590_001	Banana	plastid	85.05	60.52
GSMUA_Achr8P31110_001	Banana	cytosol	24.25	54.89
KRH27852	Soybean	cytosol, nucleus	25.25	23.31
KRH77634	Soybean	cytosol, nucleus	24.92	23.01

Protein Annotations

EntrezGene:100798414	Gene3D:2.130.10.10	MapMan:22.4.1.1	UniProt:A0A0R0J154	EMBL:ACUP02005331	InterPro:G-protein_beta_WD-40_rep
EnsemblPlantsGene:GLYMA_08G321800	GO:GO:0000139	GO:GO:0003674	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006810
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0015031	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0030127	GO:GO:0090114	GO:GO:1904263
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRH46249	ProteinID:KRH46249	ProteinID:KRH46249.1
PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR11024	PANTHER:PTHR11024:SF2
SMART:SM00320	SUPFAM:SSF50978	InterPro:Sec13	InterPro:Sec13/Seh1_fam	UniParc:UPI0002338CB4	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:44061879..44063980

Molecular Weight (calculated)

32602.2 Da

IEP (calculated)

5.926

GRAVY (calculated)

-0.204

Length

301 amino acids

Sequence
(BLAST)

001: MPSQKVETGH QDTVHDVAMD YYGKRLATAS SDHTIKIIGV SNTASQHLAT LTGHQGPVWQ VAWAHPKFGS LLASCSYDGR VIVWKEGNQN EWTQAHVFDD
101: HKSSVNSVAW APHELGLCLA CGSSDGNISV LTARADGGWD TVRIDQAHPV GVTSVSWAPS MAPGALVGAG LLDPVQKLCS GGCDNTVKVW KLNNGLWKMD
201: CFPALQMHTD WVRDVAWAPN LGLPKSTIAS ASQDGKVIIW TVAKEGDQWE GKVLNDFNTP VWRVSWSLTG NILAVADGNN NVTLWKEAVD GEWQQVTTVE
301: P

Best Arabidopsis Sequence Match ( AT2G30050.1 )
(BLAST)

001: MPGQKIETGH EDIVHDVQMD YYGKRIATAS SDCTIKITGV SNNGGSQQLA TLTGHRGPVW EVAWAHPKYG SILASCSYDG QVILWKEGNQ NQWTQDHVFT
101: DHKSSVNSIA WAPHDIGLSL ACGSSDGNIS VFTARADGGW DTSRIDQAHP VGVTSVSWAP ATAPGALVSS GLLDPVYKLA SGGCDNTVKV WKLANGSWKM
201: DCFPALQKHT DWVRDVAWAP NLGLPKSTIA SGSQDGKVII WTVGKEGEQW EGKVLKDFMT PVWRVSWSLT GNLLAVSDGN NNVTVWKEAV DGEWEQVTAV
301: EP

Arabidopsis Description

SEC13BProtein transport protein SEC13 homolog B [Source:UniProtKB/Swiss-Prot;Acc:O64740]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.