CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG27287
KXG33291

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30050.1	KXG27287	AT1G22920.1	21798944
AT3G01340.1	KXG33291	AT3G16300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES00059	Sorghum	cytosol	83.95	89.18
GSMUA_Achr7P26060_001	Banana	cytosol	76.54	82.12
GSMUA_Achr9P19430_001	Banana	cytosol	75.62	81.13
VIT_14s0066g02380.t01	Wine grape	cytosol	75.31	81.06
KRG98707	Soybean	endoplasmic reticulum, nucleus	75.0	80.73
VIT_13s0106g00770.t01	Wine grape	cytosol	74.38	80.07
KRH46229	Soybean	cytosol	74.38	80.07
KRH46249	Soybean	endoplasmic reticulum, nucleus	74.38	80.07
KRG98686	Soybean	endoplasmic reticulum, nucleus	73.77	79.4
Solyc02g087300.1.1	Tomato	extracellular, nucleus	72.84	78.15
PGSC0003DMT400003265	Potato	cytosol	72.84	78.15
VIT_19s0015g00810.t01	Wine grape	cytosol	73.15	77.7
AT2G30050.1	Thale cress	cytosol	71.91	77.15
CDY24035	Canola	cytosol	71.6	77.08
CDX84863	Canola	cytosol	71.3	76.74
Bra022774.1-P	Field mustard	cytosol	71.3	76.74
CDY37530	Canola	cytosol	71.3	76.49
CDY02025	Canola	cytosol	71.3	76.24
Bra039126.1-P	Field mustard	cytosol	70.99	76.16
CDY49046	Canola	cytosol	70.68	75.83
AT3G01340.1	Thale cress	cytosol	70.06	75.17
CDX97854	Canola	cytosol	69.44	74.75
PGSC0003DMT400006490	Potato	cytosol	68.21	73.42
Solyc03g120900.1.1	Tomato	cytosol	66.98	72.09
CDY10705	Canola	cytosol	70.99	63.01
Bra018343.1-P	Field mustard	cytosol	70.99	63.01
EER96133	Sorghum	cytosol	57.1	61.87
GSMUA_Achr1P22590_001	Banana	plastid	77.16	59.1
GSMUA_Achr8P31110_001	Banana	cytosol	22.84	55.64
CDY29706	Canola	cytosol, plastid	69.44	32.61
Bra021603.1-P	Field mustard	plastid	69.44	32.51
EES03291	Sorghum	cytosol	22.22	22.22

Protein Annotations

Gene3D:2.130.10.10	MapMan:22.4.1.1	UniProt:A0A1W0W5D7	GO:GO:0000139	GO:GO:0003674	GO:GO:0005198
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987
GO:GO:0015031	GO:GO:0016020	GO:GO:0016043	GO:GO:0016192	GO:GO:0030127	GO:GO:0090114
GO:GO:1904263	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:OQU89582	ProteinID:OQU89582
ProteinID:OQU89582.1	PFAM:PF00400	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR11024	PANTHER:PTHR11024:SF2
SMART:SM00320	EnsemblPlantsGene:SORBI_3002G217500	SUPFAM:SSF50978	InterPro:Sec13	InterPro:Sec13/Seh1_fam	UniParc:UPI0009DC88B5
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:

Description

hypothetical protein

Coordinates

chr2:+:60978740..60981419

Molecular Weight (calculated)

35347.3 Da

IEP (calculated)

5.997

GRAVY (calculated)

-0.358

Length

324 amino acids

Sequence
(BLAST)

001: MPPHNIETGH QDVVHDVAMD YYGKRIATAS SDNTIKIVGV SGTSHQQLAT LSGHQGPVWQ VVWAHPKFGS MLASCGYDGC VIIWKEGGRP DEWVQAHTFT
101: EHKSSVNSIA WAPHELGLCL ACGSSDGNIS VFTARADGIW DTTRIDQAHP VGVTSVSWAP AMAPGALITA GPSGQFEYVQ KLASGGCDNT VKVWKLQNGS
201: WRMDCFPALQ MHKDWVRDVA WAPNLGLPKS TIASASQDGT VVIWTEAKEG EQWVGRVLHD FKTPVWRLSW SLTGNILAAS DGNNNVTLWK EAVDGTDTNE
301: EHEPEVERDV NARKRHESVT TDGK

Best Arabidopsis Sequence Match ( AT2G30050.1 )
(BLAST)

001: MPGQKIETGH EDIVHDVQMD YYGKRIATAS SDCTIKITGV SNNGGSQQLA TLTGHRGPVW EVAWAHPKYG SILASCSYDG QVILWKEGNQ NQWTQDHVFT
101: DHKSSVNSIA WAPHDIGLSL ACGSSDGNIS VFTARADGGW DTSRIDQAHP VGVTSVSWAP ATAPGALVSS GLLDPVYKLA SGGCDNTVKV WKLANGSWKM
201: DCFPALQKHT DWVRDVAWAP NLGLPKSTIA SGSQDGKVII WTVGKEGEQW EGKVLKDFMT PVWRVSWSLT GNLLAVSDGN NNVTVWKEAV DGEWEQVTAV
301: EP

Arabidopsis Description

SEC13BProtein transport protein SEC13 homolog B [Source:UniProtKB/Swiss-Prot;Acc:O64740]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.