Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- endoplasmic reticulum 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G30050.1 | CDY04768 | AT1G22920.1 | 21798944 |
| AT2G30050.1 | CDY21400 | AT1G22920.1 | 21798944 |
| AT2G30050.1 | CDY25761 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018343.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| CDY02025 | Canola | cytosol | 80.0 | 96.37 |
| CDY24035 | Canola | cytosol | 75.89 | 92.03 |
| CDX84863 | Canola | cytosol | 75.62 | 91.69 |
| CDX97854 | Canola | cytosol | 74.79 | 90.7 |
| AT2G30050.1 | Thale cress | cytosol | 74.52 | 90.07 |
| VIT_14s0066g02380.t01 | Wine grape | cytosol | 70.14 | 85.05 |
| VIT_13s0106g00770.t01 | Wine grape | cytosol | 69.86 | 84.72 |
| CDY49046 | Canola | cytosol | 69.86 | 84.44 |
| VIT_19s0015g00810.t01 | Wine grape | cytosol | 69.86 | 83.61 |
| CDY37530 | Canola | cytosol | 69.04 | 83.44 |
| PGSC0003DMT400003265 | Potato | cytosol | 67.95 | 82.12 |
| Solyc02g087300.1.1 | Tomato | extracellular, nucleus | 67.67 | 81.79 |
| GSMUA_Achr7P26060_001 | Banana | cytosol | 67.12 | 81.13 |
| GSMUA_Achr9P19430_001 | Banana | cytosol | 65.48 | 79.14 |
| TraesCS5B01G499200.1 | Wheat | cytosol | 65.75 | 78.69 |
| EES00059 | Sorghum | cytosol | 65.48 | 78.36 |
| TraesCS3D01G145000.1 | Wheat | cytosol | 65.48 | 78.36 |
| HORVU3Hr1G027730.1 | Barley | cytosol | 65.21 | 78.03 |
| TraesCS5A01G485600.1 | Wheat | cytosol | 65.21 | 78.03 |
| TraesCS1A01G044200.1 | Wheat | cytosol | 65.21 | 78.03 |
| TraesCS1D01G044700.1 | Wheat | cytosol | 64.11 | 77.74 |
| Os02t0135800-02 | Rice | cytosol | 64.93 | 77.7 |
| Zm00001d008932_P001 | Maize | extracellular | 64.93 | 77.7 |
| Zm00001d039365_P001 | Maize | nucleus | 64.93 | 77.7 |
| TraesCS3B01G162400.1 | Wheat | cytosol | 64.38 | 77.3 |
| TraesCS1B01G057100.1 | Wheat | cytosol | 41.64 | 74.51 |
| OQU89582 | Sorghum | cytosol | 63.01 | 70.99 |
| GSMUA_Achr1P22590_001 | Banana | plastid | 66.3 | 57.21 |
| GSMUA_Achr8P31110_001 | Banana | cytosol | 17.81 | 48.87 |
| CDY29706 | Canola | cytosol, plastid | 74.52 | 39.42 |
| CDY08370 | Canola | plastid | 17.81 | 19.82 |
| CDY47852 | Canola | cytosol | 17.26 | 17.36 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:22.4.1.1 | UniProt:A0A078F8B9 | EnsemblPlants:CDY10705 | ProteinID:CDY10705 | ProteinID:CDY10705.1 |
| InterPro:G-protein_beta_WD-40_rep | GO:GO:0000139 | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0006810 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0015031 | GO:GO:0016020 |
| GO:GO:0016043 | GO:GO:0016192 | GO:GO:0030127 | GO:GO:0090114 | GO:GO:1904263 | EnsemblPlantsGene:GSBRNA2T00048495001 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF00400 | PRINTS:PR00320 | PFscan:PS50082 |
| PFscan:PS50294 | PANTHER:PTHR11024 | PANTHER:PTHR11024:SF2 | SMART:SM00320 | SUPFAM:SSF50978 | InterPro:Sec13 |
| InterPro:Sec13/Seh1_fam | UniParc:UPI0002547C7F | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
BnaA05g12310DBnaA05g12310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F8B9]
Coordinates
chrLK032006:+:64824..67034
Molecular Weight (calculated)
39568.2 Da
IEP (calculated)
6.137
GRAVY (calculated)
-0.433
Length
365 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGHKIETGH EDTVHDVQMD YYGKRVATAS SDCTIKITGV SNNGASQHLA TLTGHRGPVW EVAWAHPKFG SMLASCSYDG QVILWKEGSQ NQWTQAHVFT
101: DHKTSVSSIA WAPYELGLSL ACGSSDGNIS VFTGRGDGGW DTTKIDQAHP VGVTSVSWAP STAPGALVSS GLLDPVYKLA SGGCDNTVKV WKLSNGSWKM
201: DCFPALQKHS DWVRDVAWAP NLGLPKSTIA SGSQDGKVVI WTVGKEGEQW EGKVLNDFKA PVWRVSWSLT GNLLAVSDGN NNVTVWKEAV DGEWQQTAKH
301: LWKKFKEVAK FEEAKEESKD ASQAAGLLEK LTVEEKEEKP VEKVASAEAE KAVEEKKTKE SVPSA
101: DHKTSVSSIA WAPYELGLSL ACGSSDGNIS VFTGRGDGGW DTTKIDQAHP VGVTSVSWAP STAPGALVSS GLLDPVYKLA SGGCDNTVKV WKLSNGSWKM
201: DCFPALQKHS DWVRDVAWAP NLGLPKSTIA SGSQDGKVVI WTVGKEGEQW EGKVLNDFKA PVWRVSWSLT GNLLAVSDGN NNVTVWKEAV DGEWQQTAKH
301: LWKKFKEVAK FEEAKEESKD ASQAAGLLEK LTVEEKEEKP VEKVASAEAE KAVEEKKTKE SVPSA
001: MPGQKIETGH EDIVHDVQMD YYGKRIATAS SDCTIKITGV SNNGGSQQLA TLTGHRGPVW EVAWAHPKYG SILASCSYDG QVILWKEGNQ NQWTQDHVFT
101: DHKSSVNSIA WAPHDIGLSL ACGSSDGNIS VFTARADGGW DTSRIDQAHP VGVTSVSWAP ATAPGALVSS GLLDPVYKLA SGGCDNTVKV WKLANGSWKM
201: DCFPALQKHT DWVRDVAWAP NLGLPKSTIA SGSQDGKVII WTVGKEGEQW EGKVLKDFMT PVWRVSWSLT GNLLAVSDGN NNVTVWKEAV DGEWEQVTAV
301: EP
101: DHKSSVNSIA WAPHDIGLSL ACGSSDGNIS VFTARADGGW DTSRIDQAHP VGVTSVSWAP ATAPGALVSS GLLDPVYKLA SGGCDNTVKV WKLANGSWKM
201: DCFPALQKHT DWVRDVAWAP NLGLPKSTIA SGSQDGKVII WTVGKEGEQW EGKVLKDFMT PVWRVSWSLT GNLLAVSDGN NNVTVWKEAV DGEWEQVTAV
301: EP
Arabidopsis Description
SEC13BProtein transport protein SEC13 homolog B [Source:UniProtKB/Swiss-Prot;Acc:O64740]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.