Factsheet for Solyc02g087300.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus

Predictor Summary:

nucleus 2
endoplasmic reticulum 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g120870.2.1
Solyc06g073150.2.1
Solyc11g017300.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30050.1	Solyc06g073150.2.1	AT1G22920.1	21798944
AT2G30050.1	Solyc11g017300.1.1	AT1G22920.1	21798944
AT3G01340.1	Solyc03g120870.2.1	AT3G16300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003265	Potato	cytosol	99.01	99.01
VIT_14s0066g02380.t01	Wine grape	cytosol	90.07	90.37
VIT_13s0106g00770.t01	Wine grape	cytosol	88.74	89.04
VIT_19s0015g00810.t01	Wine grape	cytosol	88.41	87.54
GSMUA_Achr9P19430_001	Banana	cytosol	82.45	82.45
CDY02025	Canola	cytosol	82.12	81.85
GSMUA_Achr7P26060_001	Banana	cytosol	81.79	81.79
CDY24035	Canola	cytosol	81.13	81.4
AT2G30050.1	Thale cress	cytosol	81.13	81.13
Bra022774.1-P	Field mustard	cytosol	80.79	81.06
CDX84863	Canola	cytosol	80.79	81.06
Os02t0135800-02	Rice	cytosol	81.46	80.66
EES00059	Sorghum	cytosol	81.46	80.66
Solyc03g120900.1.1	Tomato	cytosol	80.13	80.4
Zm00001d039365_P001	Maize	nucleus	80.79	80.0
Zm00001d008932_P001	Maize	extracellular	80.79	80.0
TraesCS1D01G044700.1	Wheat	cytosol	79.47	79.73
HORVU3Hr1G027730.1	Barley	cytosol	80.46	79.67
TraesCS5B01G499200.1	Wheat	cytosol	80.46	79.67
TraesCS1A01G044200.1	Wheat	cytosol	80.46	79.67
AT3G01340.1	Thale cress	cytosol	79.47	79.47
CDX97854	Canola	cytosol	79.14	79.4
TraesCS3D01G145000.1	Wheat	cytosol	80.13	79.34
CDY37530	Canola	cytosol	79.14	79.14
TraesCS5A01G485600.1	Wheat	cytosol	79.8	79.02
TraesCS1B01G057100.1	Wheat	cytosol	53.31	78.92
CDY49046	Canola	cytosol	78.81	78.81
Bra039126.1-P	Field mustard	cytosol	78.48	78.48
TraesCS3B01G162400.1	Wheat	cytosol	78.81	78.29
OQU89582	Sorghum	cytosol	78.15	72.84
CDY10705	Canola	cytosol	81.79	67.67
Bra018343.1-P	Field mustard	cytosol	81.79	67.67
GSMUA_Achr1P22590_001	Banana	plastid	81.79	58.39
GSMUA_Achr8P31110_001	Banana	cytosol	23.18	52.63
CDY29706	Canola	cytosol, plastid	78.81	34.49
Bra021603.1-P	Field mustard	plastid	78.48	34.25
Solyc08g082100.2.1	Tomato	nucleus	22.85	21.23

Protein Annotations

Gene3D:2.130.10.10	MapMan:22.4.1.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000139	GO:GO:0003674	GO:GO:0005198
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987
GO:GO:0015031	GO:GO:0016020	GO:GO:0016043	GO:GO:0016192	GO:GO:0030127	GO:GO:0090114
GO:GO:1904263	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:K4BBN7	PFAM:PF00400
PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR11024	PANTHER:PTHR11024:SF2	SMART:SM00320
SUPFAM:SSF50978	InterPro:Sec13	InterPro:Sec13/Seh1_fam	EnsemblPlantsGene:Solyc02g087300.1	EnsemblPlants:Solyc02g087300.1.1	UniParc:UPI0002767F33
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:

Description

No Description!

Coordinates

chr2:+:49747670..49748578

Molecular Weight (calculated)

32462.9 Da

IEP (calculated)

6.276

GRAVY (calculated)

-0.244

Length

302 amino acids

Sequence
(BLAST)

001: MPAQKIETGH NDTVHDVTMD YYGKRVATAS SDTTIKITGV SNNAASQHLA TLSGHTGPVW QAGWAHPKFG SILASCSYDG KVIIWKEGNQ NEWAQAHVFS
101: EHKSSVNSIS WAPHELGLCL ACGSSDGNIS VHTARSDGGW DTTRIDQAHP VGVTSVSWAP SMAPGALVGA GVLEPVQKLA SGGCDNTVKV WKLYNGVWKM
201: DCFPALQMHT NWVRDVAWAP NLGLPKSTIA SASEDGTVVI WTVGKEGDQW EGKVLKDFKS PVWRVSWSLT GNLLAVAAGD NNVTLWKEAV DGEWQQASTV
301: DQ

Best Arabidopsis Sequence Match ( AT2G30050.1 )
(BLAST)

001: MPGQKIETGH EDIVHDVQMD YYGKRIATAS SDCTIKITGV SNNGGSQQLA TLTGHRGPVW EVAWAHPKYG SILASCSYDG QVILWKEGNQ NQWTQDHVFT
101: DHKSSVNSIA WAPHDIGLSL ACGSSDGNIS VFTARADGGW DTSRIDQAHP VGVTSVSWAP ATAPGALVSS GLLDPVYKLA SGGCDNTVKV WKLANGSWKM
201: DCFPALQKHT DWVRDVAWAP NLGLPKSTIA SGSQDGKVII WTVGKEGEQW EGKVLKDFMT PVWRVSWSLT GNLLAVSDGN NNVTVWKEAV DGEWEQVTAV
301: EP

Arabidopsis Description

SEC13BProtein transport protein SEC13 homolog B [Source:UniProtKB/Swiss-Prot;Acc:O64740]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.