CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY04768
CDY21400
CDY25761

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30050.1	CDY04768	AT1G22920.1	21798944
AT2G30050.1	CDY21400	AT1G22920.1	21798944
AT2G30050.1	CDY25761	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84863	Canola	cytosol	94.02	94.02
CDY24035	Canola	cytosol	93.69	93.69
CDY02025	Canola	cytosol	92.69	92.08
AT2G30050.1	Thale cress	cytosol	90.37	90.07
CDY49046	Canola	cytosol	85.05	84.77
CDY37530	Canola	cytosol	84.39	84.11
VIT_14s0066g02380.t01	Wine grape	cytosol	83.39	83.39
VIT_13s0106g00770.t01	Wine grape	cytosol	83.06	83.06
VIT_19s0015g00810.t01	Wine grape	cytosol	83.06	81.97
GSMUA_Achr7P26060_001	Banana	cytosol	80.07	79.8
GSMUA_Achr9P19430_001	Banana	cytosol	80.07	79.8
PGSC0003DMT400003265	Potato	cytosol	80.07	79.8
Solyc02g087300.1.1	Tomato	extracellular, nucleus	79.4	79.14
TraesCS5B01G499200.1	Wheat	cytosol	77.74	76.72
EES00059	Sorghum	cytosol	77.41	76.39
TraesCS3D01G145000.1	Wheat	cytosol	77.41	76.39
Zm00001d008932_P001	Maize	extracellular	77.08	76.07
Zm00001d039365_P001	Maize	nucleus	77.08	76.07
TraesCS5A01G485600.1	Wheat	cytosol	77.08	76.07
HORVU3Hr1G027730.1	Barley	cytosol	77.08	76.07
TraesCS1D01G044700.1	Wheat	cytosol	75.75	75.75
Os02t0135800-02	Rice	cytosol	76.74	75.74
TraesCS1A01G044200.1	Wheat	cytosol	76.74	75.74
TraesCS3B01G162400.1	Wheat	cytosol	76.41	75.66
CDY10705	Canola	cytosol	90.7	74.79
TraesCS1B01G057100.1	Wheat	cytosol	48.84	72.06
OQU89582	Sorghum	cytosol	74.75	69.44
GSMUA_Achr1P22590_001	Banana	plastid	79.4	56.5
GSMUA_Achr8P31110_001	Banana	cytosol	21.93	49.62
CDY29706	Canola	cytosol, plastid	97.01	42.32
CDY08370	Canola	plastid	21.93	20.12
CDY47852	Canola	cytosol	21.59	17.91

Protein Annotations

Gene3D:2.130.10.10	MapMan:22.4.1.1	EnsemblPlants:CDX97854	ProteinID:CDX97854	ProteinID:CDX97854.1	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0016192	GO:GO:0030127	GO:GO:0090114
GO:GO:1904263	EnsemblPlantsGene:GSBRNA2T00105181001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400
PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR11024	PANTHER:PTHR11024:SF2	SMART:SM00320
SUPFAM:SSF50978	InterPro:Sec13	InterPro:Sec13/Seh1_fam	UniParc:UPI0004EECECC	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:	:

Description

BnaC04g40850D

Coordinates

chrLK031901:-:1013903..1015557

Molecular Weight (calculated)

32512.2 Da

IEP (calculated)

5.790

GRAVY (calculated)

-0.208

Length

301 amino acids

Sequence
(BLAST)

001: MPGQKIETGH EDMVHDVQMD YYGKKVATAS SDCTIKITGV NAGGSQHLAT LTGHRGPVWQ VAWAHPKFGS ILASCSYDGQ VILWKEGSQN QWTQAHVFTD
101: HKSSVNSIAW APYELGLSFA CGSSDGNISV FTGRADGGWD TAKIDQAHPV GVTSVSWAPS TVPGALVSSG LLDPVYKLAS GGCDNTVKVW KLSDGLWKMD
201: CFPALQKHSD WVRDVAWAPN LGLPKSTIAS GSQDGKVIIW TVGKEGEQWE GKVLKDFLAP VWRVSWSLTG NMLAVSDGNN NVTVWKEAVD GEWEQVTVLE
301: P

Best Arabidopsis Sequence Match ( AT2G30050.1 )
(BLAST)

001: MPGQKIETGH EDIVHDVQMD YYGKRIATAS SDCTIKITGV SNNGGSQQLA TLTGHRGPVW EVAWAHPKYG SILASCSYDG QVILWKEGNQ NQWTQDHVFT
101: DHKSSVNSIA WAPHDIGLSL ACGSSDGNIS VFTARADGGW DTSRIDQAHP VGVTSVSWAP ATAPGALVSS GLLDPVYKLA SGGCDNTVKV WKLANGSWKM
201: DCFPALQKHT DWVRDVAWAP NLGLPKSTIA SGSQDGKVII WTVGKEGEQW EGKVLKDFMT PVWRVSWSLT GNLLAVSDGN NNVTVWKEAV DGEWEQVTAV
301: EP

Arabidopsis Description

SEC13BProtein transport protein SEC13 homolog B [Source:UniProtKB/Swiss-Prot;Acc:O64740]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.