Factsheet for HORVU3Hr1G027730.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
endoplasmic reticulum 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G018470.1
HORVU0Hr1G025410.1
HORVU1Hr1G008160.1
HORVU2Hr1G056160.5
HORVU2Hr1G067660.1
HORVU2Hr1G112000.1
HORVU3Hr1G021300.1
HORVU3Hr1G054660.1
HORVU3Hr1G113750.1
HORVU4Hr1G047410.2
HORVU4Hr1G048730.1
HORVU6Hr1G023630.1
HORVU7Hr1G078010.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30050.1	HORVU0Hr1G018470.1	AT1G22920.1	21798944
AT2G30050.1	HORVU0Hr1G025410.1	AT1G22920.1	21798944
AT2G30050.1	HORVU1Hr1G008160.1	AT1G22920.1	21798944
AT2G30050.1	HORVU2Hr1G056160.5	AT1G22920.1	21798944
AT2G30050.1	HORVU2Hr1G067660.1	AT1G22920.1	21798944
AT2G30050.1	HORVU2Hr1G112000.1	AT1G22920.1	21798944
AT2G30050.1	HORVU3Hr1G021300.1	AT1G22920.1	21798944
AT2G30050.1	HORVU3Hr1G054660.1	AT1G22920.1	21798944
AT2G30050.1	HORVU3Hr1G113750.1	AT1G22920.1	21798944
AT2G30050.1	HORVU4Hr1G047410.2	AT1G22920.1	21798944
AT2G30050.1	HORVU4Hr1G048730.1	AT1G22920.1	21798944
AT2G30050.1	HORVU6Hr1G023630.1	AT1G22920.1	21798944
AT2G30050.1	HORVU7Hr1G078010.1	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G499200.1	Wheat	cytosol	98.03	98.03
TraesCS3D01G145000.1	Wheat	cytosol	98.03	98.03
TraesCS5A01G485600.1	Wheat	cytosol	97.7	97.7
TraesCS3B01G162400.1	Wheat	cytosol	95.74	96.05
Zm00001d039365_P001	Maize	nucleus	94.43	94.43
Os02t0135800-02	Rice	cytosol	94.43	94.43
EES00059	Sorghum	cytosol	94.1	94.1
Zm00001d008932_P001	Maize	extracellular	93.77	93.77
GSMUA_Achr7P26060_001	Banana	cytosol	84.59	85.43
GSMUA_Achr9P19430_001	Banana	cytosol	83.28	84.11
VIT_14s0066g02380.t01	Wine grape	cytosol	82.62	83.72
KRH46249	Soybean	endoplasmic reticulum, nucleus	82.62	83.72
VIT_13s0106g00770.t01	Wine grape	cytosol	82.3	83.39
KRG98707	Soybean	endoplasmic reticulum, nucleus	82.3	83.39
KRG98686	Soybean	endoplasmic reticulum, nucleus	81.97	83.06
KRH46229	Soybean	cytosol	81.97	83.06
VIT_19s0015g00810.t01	Wine grape	cytosol	81.31	81.31
Solyc02g087300.1.1	Tomato	extracellular, nucleus	79.67	80.46
PGSC0003DMT400003265	Potato	cytosol	79.67	80.46
AT2G30050.1	Thale cress	cytosol	79.02	79.8
CDY24035	Canola	cytosol	78.36	79.4
CDY02025	Canola	cytosol	78.69	79.21
CDX84863	Canola	cytosol	78.03	79.07
Bra022774.1-P	Field mustard	cytosol	78.03	79.07
CDY37530	Canola	cytosol	77.7	78.48
Bra039126.1-P	Field mustard	cytosol	77.38	78.15
CDY49046	Canola	cytosol	77.05	77.81
AT3G01340.1	Thale cress	cytosol	76.39	77.15
CDX97854	Canola	cytosol	76.07	77.08
PGSC0003DMT400006490	Potato	cytosol	75.41	76.41
Solyc03g120900.1.1	Tomato	cytosol	74.43	75.42
CDY10705	Canola	cytosol	78.03	65.21
Bra018343.1-P	Field mustard	cytosol	78.03	65.21
GSMUA_Achr1P22590_001	Banana	plastid	82.95	59.81
HORVU2Hr1G109500.1	Barley	cytosol	60.66	58.36
GSMUA_Achr8P31110_001	Banana	cytosol	24.26	55.64
CDY29706	Canola	cytosol, plastid	76.39	33.77
Bra021603.1-P	Field mustard	plastid	76.39	33.67
HORVU3Hr1G055410.2	Barley	cytosol	22.62	21.36

Protein Annotations

Gene3D:2.130.10.10	MapMan:22.4.1.1	EMBL:AK358543	EMBL:AK367382	UniProt:F2D3T5	InterPro:G-protein_beta_WD-40_rep
GO:GO:0000139	GO:GO:0003674	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0015031	GO:GO:0016020	GO:GO:0016043
GO:GO:0016192	GO:GO:0030127	GO:GO:0090114	GO:GO:1904263	EnsemblPlantsGene:HORVU3Hr1G027730	EnsemblPlants:HORVU3Hr1G027730.1
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR11024	PANTHER:PTHR11024:SF2	SMART:SM00320	SUPFAM:SSF50978	InterPro:Sec13
InterPro:Sec13/Seh1_fam	UniParc:UPI00020052A9	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D3T5]

Coordinates

chrchr3H:+:120303710..120307660

Molecular Weight (calculated)

33276.0 Da

IEP (calculated)

6.168

GRAVY (calculated)

-0.294

Length

305 amino acids

Sequence
(BLAST)

001: MPPHKIETGH QDVVHDIAMD YYGKRLATAS SDNTIKIIGI SGTSQQQLAT LSGHQGPVWQ VAWAHPKYGS MLASCSYDGR VIIWKEGGKP DEWAQAHTFV
101: EHKSSVNSIA WAPHELGLCL ACGSSDGNIS VFTVRSDGGW ETTRIDQAHP VGVTSVSWAP AMAPGALISP GPSGQFEYVQ KLASGGCDNT VKVWKLTNGS
201: WRMDCFPALQ MHRDWVRDVA WAPNLGLPKS TIASASQDGT VVIWTAPKEG EQWEGRVLND FRTPVWRVSW SLTGNILAVS DGNNNVTLWK EAVDGEWQQV
301: TTVEP

Best Arabidopsis Sequence Match ( AT2G30050.1 )
(BLAST)

001: MPGQKIETGH EDIVHDVQMD YYGKRIATAS SDCTIKITGV SNNGGSQQLA TLTGHRGPVW EVAWAHPKYG SILASCSYDG QVILWKEGNQ NQWTQDHVFT
101: DHKSSVNSIA WAPHDIGLSL ACGSSDGNIS VFTARADGGW DTSRIDQAHP VGVTSVSWAP ATAPGALVSS GLLDPVYKLA SGGCDNTVKV WKLANGSWKM
201: DCFPALQKHT DWVRDVAWAP NLGLPKSTIA SGSQDGKVII WTVGKEGEQW EGKVLKDFMT PVWRVSWSLT GNLLAVSDGN NNVTVWKEAV DGEWEQVTAV
301: EP

Arabidopsis Description

SEC13BProtein transport protein SEC13 homolog B [Source:UniProtKB/Swiss-Prot;Acc:O64740]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.