CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

nucleus 2
endoplasmic reticulum 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98707	Soybean	endoplasmic reticulum, nucleus	97.67	97.67
KRH46249	Soybean	endoplasmic reticulum, nucleus	97.67	97.67
KRH46229	Soybean	cytosol	97.34	97.34
GSMUA_Achr7P26060_001	Banana	cytosol	85.05	84.77
GSMUA_Achr9P19430_001	Banana	cytosol	85.05	84.77
Zm00001d039365_P001	Maize	nucleus	83.39	82.3
Zm00001d008932_P001	Maize	extracellular	83.39	82.3
TraesCS5B01G499200.1	Wheat	cytosol	83.39	82.3
TraesCS3D01G145000.1	Wheat	cytosol	83.39	82.3
EES00059	Sorghum	cytosol	83.39	82.3
HORVU3Hr1G027730.1	Barley	cytosol	83.06	81.97
TraesCS5A01G485600.1	Wheat	cytosol	83.06	81.97
PGSC0003DMT400006490	Potato	cytosol	81.4	81.4
Os02t0135800-02	Rice	cytosol	82.39	81.31
TraesCS1D01G044700.1	Wheat	cytosol	81.06	81.06
TraesCS1A01G044200.1	Wheat	cytosol	82.06	80.98
TraesCS3B01G162400.1	Wheat	cytosol	81.73	80.92
Solyc03g120900.1.1	Tomato	cytosol	80.4	80.4
TraesCS1B01G057100.1	Wheat	cytosol	52.16	76.96
OQU89582	Sorghum	cytosol	79.4	73.77
GSMUA_Achr1P22590_001	Banana	plastid	84.05	59.81
GSMUA_Achr8P31110_001	Banana	cytosol	24.25	54.89
KRH27852	Soybean	cytosol, nucleus	25.91	23.93
KRH77634	Soybean	cytosol, nucleus	25.58	23.62

Protein Annotations

Gene3D:2.130.10.10	MapMan:22.4.1.1	EMBL:ACUP02010911	InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_18G090700	GO:GO:0000139
GO:GO:0003674	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009987	GO:GO:0015031	GO:GO:0016020	GO:GO:0016043	GO:GO:0016192
GO:GO:0030127	GO:GO:0090114	GO:GO:1904263	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:K7MQS2	EnsemblPlants:KRG98686	ProteinID:KRG98686	ProteinID:KRG98686.1	PFAM:PF00400	PRINTS:PR00320
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR11024	PANTHER:PTHR11024:SF2	SMART:SM00320	SUPFAM:SSF50978
InterPro:Sec13	InterPro:Sec13/Seh1_fam	UniParc:UPI000233F3F2	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:9016075..9018183

Molecular Weight (calculated)

32604.3 Da

IEP (calculated)

6.111

GRAVY (calculated)

-0.202

Length

301 amino acids

Sequence
(BLAST)

001: MPSQKVETGH QDTVHDVAMD YYGKRLATAS SDHTIKIIGV SNTASQHLAT LTGHQGPVWQ VAWAHPKFGS LLASCSYDGR VIVWKEGNQN EWTQAHVFDD
101: HKSSVNSVAW VPHELGLCLA CGSSDGNISV VTARADGGWD TARIDQAHPV GVTSVSWAPS MAPGALVGGG LLDPVQKLCS GGCDNTVKVW KLNNGLWKMD
201: CFPALQMHMD WVRDVAWAPN LGLPKSTIAS ASQDGKVIIW TVAKDGDQWE GKVLNDFKTP VWRVSWSLTG NILAVADGNN NVTLWKEAVD GEWQQVTTVE
301: P

Best Arabidopsis Sequence Match ( AT2G30050.1 )
(BLAST)

001: MPGQKIETGH EDIVHDVQMD YYGKRIATAS SDCTIKITGV SNNGGSQQLA TLTGHRGPVW EVAWAHPKYG SILASCSYDG QVILWKEGNQ NQWTQDHVFT
101: DHKSSVNSIA WAPHDIGLSL ACGSSDGNIS VFTARADGGW DTSRIDQAHP VGVTSVSWAP ATAPGALVSS GLLDPVYKLA SGGCDNTVKV WKLANGSWKM
201: DCFPALQKHT DWVRDVAWAP NLGLPKSTIA SGSQDGKVII WTVGKEGEQW EGKVLKDFMT PVWRVSWSLT GNLLAVSDGN NNVTVWKEAV DGEWEQVTAV
301: EP

Arabidopsis Description

SEC13BProtein transport protein SEC13 homolog B [Source:UniProtKB/Swiss-Prot;Acc:O64740]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.