CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27852	Soybean	cytosol, nucleus	93.56	93.56
VIT_02s0025g01250.t01	Wine grape	cytosol	74.54	74.77
Solyc08g082100.2.1	Tomato	nucleus	70.55	70.77
AT1G64350.1	Thale cress	plastid	64.11	64.11
Bra027738.1-P	Field mustard	plastid	64.11	63.72
CDY08370	Canola	plastid	63.8	63.41
PGSC0003DMT400032040	Potato	cytosol	70.25	63.09
EES03291	Sorghum	cytosol	58.28	58.64
GSMUA_Achr2P06320_001	Banana	cytosol	59.2	58.48
Zm00001d044193_P002	Maize	peroxisome	57.67	58.2
Os01t0620100-01	Rice	nucleus	57.67	58.02
TraesCS3B01G253300.1	Wheat	cytosol	57.06	57.59
TraesCS3A01G223900.1	Wheat	cytosol	56.75	57.28
TraesCS3D01G229700.1	Wheat	cytosol	56.75	57.28
CDY47852	Canola	cytosol	63.5	57.02
HORVU3Hr1G055410.2	Barley	cytosol	56.44	56.97
KRG98707	Soybean	endoplasmic reticulum, nucleus	23.93	25.91
KRH46229	Soybean	cytosol	23.62	25.58
KRG98686	Soybean	endoplasmic reticulum, nucleus	23.62	25.58
KRH46249	Soybean	endoplasmic reticulum, nucleus	23.01	24.92

Protein Annotations

EntrezGene:100812825	Gene3D:2.130.10.10	MapMan:23.5.1.1.1.7	EMBL:ACUP02000681	EnsemblPlantsGene:GLYMA_01G224700	GO:GO:0003674
GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009987	GO:GO:0015031	GO:GO:1904263	UniProt:I1JAC6	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRH77634	ProteinID:KRH77634	ProteinID:KRH77634.1	InterPro:Nucleoporin_Seh1
PFAM:PF00400	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR11024	PANTHER:PTHR11024:SF3	SMART:SM00320
SUPFAM:SSF50978	InterPro:Sec13/Seh1_fam	UniParc:UPI00023376F4	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:55346069..55349298

Molecular Weight (calculated)

35802.0 Da

IEP (calculated)

4.650

GRAVY (calculated)

-0.199

Length

326 amino acids

Sequence
(BLAST)

001: MAKELLTLDN GTTCTSWNYS GTRLAAGSVD GTLSIFDSRD PPSSSSLHST FKSRVLEGNI VKIVWIPPEY GDAVACISAD GIVSLWEEVA EDSQSLQWKM
101: CKSFGNSSSK VLDAQFGISL TSLKMVAAYS DGNVRVFELS DPLELRNWQL QAEFQNVIES VSSFGKASCL SASISWNPQK GGSQESSFLV GFNSNTSELN
201: SSKVWEFDQA HQRWLPVAEL ALPEEKGDQL YAVAWAPNIG RPYEIIAVAT HKGLAIWHLG LNPDHDGRLP VERVALLSGH EGMVWQMEWD MSGMTLATTG
301: HDGMVRLWQS NLNGVWHQQA AFEPTS

Best Arabidopsis Sequence Match ( AT1G64350.1 )
(BLAST)

001: MAKSMATLDS GTTCSSWNQS GDRLAAGSLN GKLSIYESST SSSSTFSCTS KVRVSESSIV KIVWLPSEYG DAVACVCEDG SLSIWEELSE DAHGLEWKLC
101: KSMKNKSSQV LDVQFGVSRK SLKMVAAYSD GYLRVFELLN PLELKNWQLQ AEFQNVIDSL STLGKPSSLS ASVSWNPMKG EEQEPSFVLA FNSDSPHLNS
201: SKIWEFDEAH NRWLAVAELA LPEDKGDPVY ALSWAPNIGR PYEVVAVATH KGIGIWHVGL APDLEGRLPV KKVSSLSGHQ GEVWQMEWDM SGMTLASTGS
301: DGMVKLWQSN LNGEWHEQAT LEPVPS

Arabidopsis Description

SEH1Protein SEH1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VR9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.