Factsheet for TraesCS3B01G253300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 2
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, vacuole
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	vacuole
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G229700.1	Wheat	cytosol	98.14	98.14
TraesCS3A01G223900.1	Wheat	cytosol	98.14	98.14
HORVU3Hr1G055410.2	Barley	cytosol	96.28	96.28
Os01t0620100-01	Rice	nucleus	85.45	85.19
Zm00001d044193_P002	Maize	peroxisome	82.04	82.04
EES03291	Sorghum	cytosol	81.73	81.48
GSMUA_Achr2P06320_001	Banana	cytosol	65.33	63.94
VIT_02s0025g01250.t01	Wine grape	cytosol	60.06	59.69
Solyc08g082100.2.1	Tomato	nucleus	59.75	59.38
KRH27852	Soybean	cytosol, nucleus	58.51	57.98
KRH77634	Soybean	cytosol, nucleus	57.59	57.06
AT1G64350.1	Thale cress	plastid	57.28	56.75
Bra027738.1-P	Field mustard	plastid	56.04	55.18
CDY08370	Canola	plastid	55.11	54.27
PGSC0003DMT400032040	Potato	cytosol	59.44	52.89
CDY47852	Canola	cytosol	56.04	49.86
TraesCS5B01G499200.1	Wheat	cytosol	20.43	21.64
TraesCS3B01G162400.1	Wheat	cytosol	20.12	21.38
TraesCS2B01G518500.1	Wheat	cytosol, golgi	19.2	19.56
TraesCS1B01G057100.1	Wheat	cytosol	12.07	19.12

Protein Annotations

Gene3D:2.130.10.10	MapMan:23.5.1.1.1.7	GO:GO:0003674	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:1904263	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	InterPro:Nucleoporin_Seh1	PFAM:PF00400	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR11024	PANTHER:PTHR11024:SF3	SMART:SM00320	SUPFAM:SSF50978	InterPro:Sec13/Seh1_fam	EnsemblPlantsGene:TraesCS3B01G253300
EnsemblPlants:TraesCS3B01G253300.1	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:

Description

No Description!

Coordinates

chr3B:-:406558207..406561998

Molecular Weight (calculated)

35217.7 Da

IEP (calculated)

4.670

GRAVY (calculated)

-0.108

Length

323 amino acids

Sequence
(BLAST)

001: MADQKVAQLG PGAACCGWNH CGRRLAAGAV DGSVSVYDSQ PSPSSKWQAH EHAIVAVVWL PPDYGDAIAC VCADGTLSLW EEIAEDDQLP IWRKCKVFEG
101: GSSHILIVQF GLLLSSLKMV IAYSDGQVKV YELLDSLELD KWQLQAELQN IIDPVSRIGK PACISASIAW SPRRGEGQQA SFAIGFNSDS PNFNSCKIWE
201: FEEAHQRWLP LIELGSPEDK GERVHALAWA PNIGRPYEMI AVATCKGIAV WHVGFNPESD GRLSTENVAV LPGHNGEVCQ LEWDMGGMTL ASTGVDGMVR
301: LWQANLNGVW HEQAVLDCNG SHQ

Best Arabidopsis Sequence Match ( AT1G64350.1 )
(BLAST)

001: MAKSMATLDS GTTCSSWNQS GDRLAAGSLN GKLSIYESST SSSSTFSCTS KVRVSESSIV KIVWLPSEYG DAVACVCEDG SLSIWEELSE DAHGLEWKLC
101: KSMKNKSSQV LDVQFGVSRK SLKMVAAYSD GYLRVFELLN PLELKNWQLQ AEFQNVIDSL STLGKPSSLS ASVSWNPMKG EEQEPSFVLA FNSDSPHLNS
201: SKIWEFDEAH NRWLAVAELA LPEDKGDPVY ALSWAPNIGR PYEVVAVATH KGIGIWHVGL APDLEGRLPV KKVSSLSGHQ GEVWQMEWDM SGMTLASTGS
301: DGMVKLWQSN LNGEWHEQAT LEPVPS

Arabidopsis Description

SEH1Protein SEH1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VR9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.