CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
peroxisome 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044193_P002	Maize	peroxisome	94.75	95.05
Os01t0620100-01	Rice	nucleus	83.33	83.33
TraesCS3A01G223900.1	Wheat	cytosol	81.79	82.04
HORVU3Hr1G055410.2	Barley	cytosol	81.79	82.04
TraesCS3D01G229700.1	Wheat	cytosol	81.48	81.73
TraesCS3B01G253300.1	Wheat	cytosol	81.48	81.73
GSMUA_Achr2P06320_001	Banana	cytosol	65.12	63.94
VIT_02s0025g01250.t01	Wine grape	cytosol	60.8	60.62
KRH27852	Soybean	cytosol, nucleus	59.57	59.2
KRH77634	Soybean	cytosol, nucleus	58.64	58.28
Solyc08g082100.2.1	Tomato	nucleus	58.33	58.15
Bra027738.1-P	Field mustard	plastid	56.17	55.49
AT1G64350.1	Thale cress	plastid	55.56	55.21
CDY08370	Canola	plastid	55.25	54.57
PGSC0003DMT400032040	Potato	cytosol	57.72	51.52
CDY47852	Canola	cytosol	56.48	50.41
EES00059	Sorghum	cytosol	22.22	23.61
OQU89582	Sorghum	cytosol	22.22	22.22
EER96133	Sorghum	cytosol	20.06	21.74

Protein Annotations

Gene3D:2.130.10.10	MapMan:23.5.1.1.1.7	EntrezGene:8054396	UniProt:C5XR43	EnsemblPlants:EES03291	ProteinID:EES03291
ProteinID:EES03291.1	GO:GO:0003674	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005635	GO:GO:0006810	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0015031	GO:GO:1904263	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	InterPro:Nucleoporin_Seh1	PFAM:PF00400	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR11024	PANTHER:PTHR11024:SF3	SMART:SM00320	EnsemblPlantsGene:SORBI_3003G223500	SUPFAM:SSF50978	unigene:Sbi.5328
InterPro:Sec13/Seh1_fam	UniParc:UPI0001A85010	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
RefSeq:XP_002458171.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:55921599..55927731

Molecular Weight (calculated)

35455.6 Da

IEP (calculated)

4.602

GRAVY (calculated)

-0.203

Length

324 amino acids

Sequence
(BLAST)

001: MTTERQVAEL GPGTACCGWN YCGRRLAAGA VDGSVSVYDS QPSPSFKWQA HEQAIVNVVW LPPEYGDAIA CACADGTLSL WEEVAADDQL PTWRKCKIFE
101: DGNSHILNVH FGLHLGSLKM VTAYSDGQVK VYELLDSLEL DKWQLQAEFQ NITDPISRFG KLACTSASIA WNPRRGGSQQ ASFAIGFNSD SPHFNSCKIW
201: EFEEAHQRWL PLVELGSPED KGDRVCAVAW APNIGRPYEI IAVATCKGIA IWHIGLNTDA DSGPTTRNVA LLNGHDGEVW QLEWDMGGMT LASTGGDGMV
301: KLWQANLDGV WHEQAVLDCS GSRV

Best Arabidopsis Sequence Match ( AT1G64350.1 )
(BLAST)

001: MAKSMATLDS GTTCSSWNQS GDRLAAGSLN GKLSIYESST SSSSTFSCTS KVRVSESSIV KIVWLPSEYG DAVACVCEDG SLSIWEELSE DAHGLEWKLC
101: KSMKNKSSQV LDVQFGVSRK SLKMVAAYSD GYLRVFELLN PLELKNWQLQ AEFQNVIDSL STLGKPSSLS ASVSWNPMKG EEQEPSFVLA FNSDSPHLNS
201: SKIWEFDEAH NRWLAVAELA LPEDKGDPVY ALSWAPNIGR PYEVVAVATH KGIGIWHVGL APDLEGRLPV KKVSSLSGHQ GEVWQMEWDM SGMTLASTGS
301: DGMVKLWQSN LNGEWHEQAT LEPVPS

Arabidopsis Description

SEH1Protein SEH1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VR9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.