Factsheet for GSMUA_Achr2P06320_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
endoplasmic reticulum 1
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G055410.2	Barley	cytosol	64.55	65.94
TraesCS3A01G223900.1	Wheat	cytosol	64.24	65.63
Os01t0620100-01	Rice	nucleus	64.24	65.43
TraesCS3B01G253300.1	Wheat	cytosol	63.94	65.33
VIT_02s0025g01250.t01	Wine grape	cytosol	64.24	65.23
EES03291	Sorghum	cytosol	63.94	65.12
TraesCS3D01G229700.1	Wheat	cytosol	63.33	64.71
Zm00001d044193_P002	Maize	peroxisome	62.73	64.09
Solyc08g082100.2.1	Tomato	nucleus	62.42	63.38
KRH77634	Soybean	cytosol, nucleus	58.48	59.2
Bra027738.1-P	Field mustard	plastid	57.88	58.23
KRH27852	Soybean	cytosol, nucleus	56.97	57.67
AT1G64350.1	Thale cress	plastid	56.97	57.67
PGSC0003DMT400032040	Potato	cytosol	63.33	57.58
CDY08370	Canola	plastid	56.67	57.01
CDY47852	Canola	cytosol	57.58	52.34
GSMUA_Achr7P26060_001	Banana	cytosol	22.42	24.5
GSMUA_Achr9P19430_001	Banana	cytosol	22.12	24.17
GSMUA_Achr1P22590_001	Banana	plastid	23.94	18.68
GSMUA_Achr8P31110_001	Banana	cytosol	7.27	18.05

Protein Annotations

Gene3D:2.130.10.10	MapMan:23.5.1.1.1.7	GO:GO:0003674	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005635	GO:GO:0006810
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0015031	GO:GO:1904263
EnsemblPlantsGene:GSMUA_Achr2G06320_001	EnsemblPlants:GSMUA_Achr2P06320_001	EnsemblPlants:GSMUA_Achr2T06320_001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M0S5M3	InterPro:Nucleoporin_Seh1	PFAM:PF00400	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR11024
PANTHER:PTHR11024:SF3	SMART:SM00320	SUPFAM:SSF50978	InterPro:Sec13/Seh1_fam	UniParc:UPI000296C966	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

Putative Nucleoporin seh1 [Source:GMGC_GENE;Acc:GSMUA_Achr2G06320_001]

Coordinates

chr2:-:11149393..11157035

Molecular Weight (calculated)

35881.0 Da

IEP (calculated)

4.446

GRAVY (calculated)

-0.108

Length

330 amino acids

Sequence
(BLAST)

001: MEREVARLGK GAICCGWNYC GLRLAVGFVD GSISIHDSLD SGSSSSASPS SSKWKAHASS VLNVVWAPPE CGDAIACICN DGTFSLWEET GEDTEHPTWK
101: LCKLFESSGS PVLDLQFGVF STSLKMVAAC SDGYVKVYEL LDPLEFNKWQ LQAEFQNVLD SVSRFGKVSC SSASIAWNPQ RGEGQQCSFV LGFSSDLPQF
201: NSSKIWEFDE AHQRWIPVAE LALPGDDSDM VHAVAWAPNI GRPFEVIAVA TCKGIAIWHV LLDPESNGRP TTEKVALLPG HDGEVWQLEW DMGGMTLAST
301: GSDGMVRLWQ SNINGIWHEH ASLDCSGAQS

Best Arabidopsis Sequence Match ( AT1G64350.1 )
(BLAST)

001: MAKSMATLDS GTTCSSWNQS GDRLAAGSLN GKLSIYESST SSSSTFSCTS KVRVSESSIV KIVWLPSEYG DAVACVCEDG SLSIWEELSE DAHGLEWKLC
101: KSMKNKSSQV LDVQFGVSRK SLKMVAAYSD GYLRVFELLN PLELKNWQLQ AEFQNVIDSL STLGKPSSLS ASVSWNPMKG EEQEPSFVLA FNSDSPHLNS
201: SKIWEFDEAH NRWLAVAELA LPEDKGDPVY ALSWAPNIGR PYEVVAVATH KGIGIWHVGL APDLEGRLPV KKVSSLSGHQ GEVWQMEWDM SGMTLASTGS
301: DGMVKLWQSN LNGEWHEQAT LEPVPS

Arabidopsis Description

SEH1Protein SEH1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VR9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.