Factsheet for GSMUA_Achr9P19430_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
endoplasmic reticulum 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr4P08280_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30050.1	GSMUA_Achr10P...	AT1G22920.1	21798944
AT3G01340.1	GSMUA_Achr4P08280_001	AT3G16300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P26060_001	Banana	cytosol	88.41	88.41
VIT_14s0066g02380.t01	Wine grape	cytosol	86.42	86.71
VIT_13s0106g00770.t01	Wine grape	cytosol	85.76	86.05
KRH46249	Soybean	endoplasmic reticulum, nucleus	85.43	85.71
KRH46229	Soybean	cytosol	85.43	85.71
KRG98707	Soybean	endoplasmic reticulum, nucleus	85.1	85.38
KRG98686	Soybean	endoplasmic reticulum, nucleus	84.77	85.05
Zm00001d008932_P001	Maize	extracellular	85.1	84.26
TraesCS5B01G499200.1	Wheat	cytosol	85.1	84.26
EES00059	Sorghum	cytosol	85.1	84.26
Zm00001d039365_P001	Maize	nucleus	84.77	83.93
VIT_19s0015g00810.t01	Wine grape	cytosol	84.77	83.93
TraesCS3D01G145000.1	Wheat	cytosol	84.44	83.61
Os02t0135800-02	Rice	cytosol	84.44	83.61
TraesCS5A01G485600.1	Wheat	cytosol	84.11	83.28
HORVU3Hr1G027730.1	Barley	cytosol	84.11	83.28
PGSC0003DMT400003265	Potato	cytosol	82.78	82.78
Solyc02g087300.1.1	Tomato	extracellular, nucleus	82.45	82.45
TraesCS1D01G044700.1	Wheat	cytosol	81.79	82.06
TraesCS1A01G044200.1	Wheat	cytosol	82.78	81.97
TraesCS3B01G162400.1	Wheat	cytosol	82.45	81.91
CDX84863	Canola	cytosol	80.79	81.06
CDY24035	Canola	cytosol	80.46	80.73
AT2G30050.1	Thale cress	cytosol	80.46	80.46
Bra022774.1-P	Field mustard	cytosol	80.13	80.4
CDX97854	Canola	cytosol	79.8	80.07
TraesCS1B01G057100.1	Wheat	cytosol	53.97	79.9
CDY02025	Canola	cytosol	80.13	79.87
PGSC0003DMT400006490	Potato	cytosol	78.15	78.41
CDY37530	Canola	cytosol	77.81	77.81
AT3G01340.1	Thale cress	cytosol	77.81	77.81
Bra039126.1-P	Field mustard	cytosol	77.48	77.48
CDY49046	Canola	cytosol	77.15	77.15
Solyc03g120900.1.1	Tomato	cytosol	76.82	77.08
OQU89582	Sorghum	cytosol	81.13	75.62
CDY10705	Canola	cytosol	79.14	65.48
Bra018343.1-P	Field mustard	cytosol	79.14	65.48
GSMUA_Achr1P22590_001	Banana	plastid	91.06	65.01
GSMUA_Achr8P31110_001	Banana	cytosol	26.82	60.9
Bra021603.1-P	Field mustard	plastid	80.46	35.12
CDY29706	Canola	cytosol, plastid	80.13	35.07
GSMUA_Achr2P06320_001	Banana	cytosol	24.17	22.12

Protein Annotations

Gene3D:2.130.10.10	MapMan:22.4.1.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000139	GO:GO:0003674	GO:GO:0005198
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987
GO:GO:0015031	GO:GO:0016020	GO:GO:0016043	GO:GO:0016192	GO:GO:0030127	GO:GO:0090114
GO:GO:1904263	EnsemblPlantsGene:GSMUA_Achr9G19430_001	EnsemblPlants:GSMUA_Achr9P19430_001	EnsemblPlants:GSMUA_Achr9T19430_001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	UniProt:M0U1Q0	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR11024	PANTHER:PTHR11024:SF2	SMART:SM00320	SUPFAM:SSF50978	InterPro:Sec13	InterPro:Sec13/Seh1_fam
UniParc:UPI000296BA09	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:

Description

Putative Protein SEC13 homolog [Source:GMGC_GENE;Acc:GSMUA_Achr9G19430_001]

Coordinates

chr9:+:20517577..20518485

Molecular Weight (calculated)

32914.7 Da

IEP (calculated)

5.852

GRAVY (calculated)

-0.141

Length

302 amino acids

Sequence
(BLAST)

001: MPFQKIETGH QDVVHDVAMD YYGKCLATAS SDMTIKIIGV NGSSHQHLAT LSGHQGPVWQ VAWAHPKFGS VISSCSYDGQ VIIWKEGNKP DEWIQAHVFT
101: EHKSSVNSIA WAPHELGLCL ACGSSDGNIS VFTARTDGGW DTTRIDQAHP VGVTSVTWAP ALAPGTLVGS GLLDPVQKLA SGGCDNTVKV WKLYNGIWKM
201: DCFPALQMHS DWVRDVAWAP YLGLPKSTIA SSSQDGTVVI WTVAKEGDQW EGKILHNFHT PVWRVSWSLT GNILAVADGD NNVTLWKEAV DGEWQQVTTV
301: EP

Best Arabidopsis Sequence Match ( AT2G30050.1 )
(BLAST)

001: MPGQKIETGH EDIVHDVQMD YYGKRIATAS SDCTIKITGV SNNGGSQQLA TLTGHRGPVW EVAWAHPKYG SILASCSYDG QVILWKEGNQ NQWTQDHVFT
101: DHKSSVNSIA WAPHDIGLSL ACGSSDGNIS VFTARADGGW DTSRIDQAHP VGVTSVSWAP ATAPGALVSS GLLDPVYKLA SGGCDNTVKV WKLANGSWKM
201: DCFPALQKHT DWVRDVAWAP NLGLPKSTIA SGSQDGKVII WTVGKEGEQW EGKVLKDFMT PVWRVSWSLT GNLLAVSDGN NNVTVWKEAV DGEWEQVTAV
301: EP

Arabidopsis Description

SEC13BProtein transport protein SEC13 homolog B [Source:UniProtKB/Swiss-Prot;Acc:O64740]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.