Factsheet for GSMUA_Achr4P08280_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, plasma membrane

Predictor Summary:

nucleus 2
peroxisome 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome, plasma membrane, plastid
Any Predictor:	nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g03780.t01	Wine grape	peroxisome, plastid, vacuole	52.91	56.19
TraesCS3D01G284700.1	Wheat	plastid	48.43	52.17
TraesCS3B01G318800.1	Wheat	cytosol, plasma membrane, plastid, vacuole	48.43	52.17
TraesCS3A01G284900.1	Wheat	plastid	48.43	52.17
Os01t0725400-01	Rice	golgi, plasma membrane, vacuole	47.09	51.47
KRH47229	Soybean	cytosol, peroxisome, plasma membrane	47.98	51.44
PGSC0003DMT400006497	Potato	plasma membrane	44.84	49.75
Solyc03g120870.2.1	Tomato	extracellular, peroxisome, plasma membrane, plastid	45.74	49.04
KXG33291	Sorghum	mitochondrion, plasma membrane, plastid, vacuole	46.19	48.82
AT1G79780.1	Thale cress	plasma membrane	36.77	43.85
Bra003530.1-P	Field mustard	plasma membrane	34.08	41.08
CDX82409	Canola	cytosol, peroxisome, plasma membrane	31.39	39.55
Bra001627.1-P	Field mustard	cytosol, peroxisome, plasma membrane	30.94	38.98
Bra027175.1-P	Field mustard	cytosol, peroxisome, plasma membrane	36.32	38.76
CDX67924	Canola	nucleus	34.08	36.89
CDX75874	Canola	plasma membrane	33.63	36.76
AT3G16300.1	Thale cress	cytosol, peroxisome, plasma membrane	34.53	36.32
CDY30156	Canola	cytosol, peroxisome, plasma membrane	36.77	33.33
TraesCS3B01G317700.2	Wheat	plastid	30.04	30.88
CDX79414	Canola	mitochondrion	34.08	20.94

Protein Annotations

EnsemblPlants:GSMUA_Achr4P08280_001	EnsemblPlants:GSMUA_Achr4T08280_001	EnsemblPlantsGene:GSMUA_Achr4G08280_001	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0016020	GO:GO:0016021	InterPro:CASP/CASPL	InterPro:CASP_dom	PANTHER:PTHR11615	PANTHER:PTHR11615:SF118
PFAM:PF04535	SEG:seg	TIGRFAMs:TIGR01569	TMHMM:TMhelix	UniParc:UPI00029568C7	UniProt:M0SM45
MapMan:35.1	:	:	:	:	:

Description

UPF0497 membrane protein 14 [Source:GMGC_GENE;Acc:GSMUA_Achr4G08280_001]

Coordinates

chr4:+:6117078..6119641

Molecular Weight (calculated)

23402.7 Da

IEP (calculated)

8.498

GRAVY (calculated)

0.646

Length

223 amino acids

Sequence
(BLAST)

001: MDVTGAVRKS AAAEVGIQMP EAAKASAVAA DSGTMSGPLV PVTGGKDHRA AAAMGWDTVA VGVRLATVLS SLLSLSIMVT AEQRGSLSVF GIQIPLYSKW
101: SFSDSFEYLV GILAAVAAHS LLQLLLSLRK LAQGLPVIPS HSHAWIIFAG DQVFAYAMMS AGSAATGVTN LNRTGIRHAL IPDFCKPLHS FCNHMAISIS
201: LAFLSCLFLA ISAVLDVLWL SKY

Best Arabidopsis Sequence Match ( AT1G79780.1 )
(BLAST)

001: MTSNGEGGEV VAKRRRKGIK ELVQVALRGG CLAASATAMA VMLTATEEGV ADIYGFKLTL SSNWSFSPSY QYVVGACAGT VLYSLLQLCL GVYRLVTGSP
101: ITPSRFQAWL CFTSDQLFCY LMMSAGSAGS GVTNLNKTGI RHTPLPDFCK TLSSFCNHVA LSLLLVFLSF IFLASSSFFT VLVLSTP

Arabidopsis Description

CASP-like protein 3A2 [Source:UniProtKB/Swiss-Prot;Acc:Q1PFB8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.