Factsheet for Bra003530.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67924	Canola	nucleus	94.05	84.47
AT1G79780.1	Thale cress	plasma membrane	78.38	77.54
CDX79414	Canola	mitochondrion	91.89	46.83
KRH47229	Soybean	cytosol, peroxisome, plasma membrane	48.65	43.27
VIT_09s0002g03780.t01	Wine grape	peroxisome, plastid, vacuole	43.24	38.1
Bra027175.1-P	Field mustard	cytosol, peroxisome, plasma membrane	42.16	37.32
Bra001627.1-P	Field mustard	cytosol, peroxisome, plasma membrane	35.14	36.72
Os01t0725400-01	Rice	golgi, plasma membrane, vacuole	38.92	35.29
GSMUA_Achr4P08280_001	Banana	peroxisome, plasma membrane, plastid	41.08	34.08
PGSC0003DMT400006497	Potato	plasma membrane	36.22	33.33
TraesCS3B01G318800.1	Wheat	cytosol, plasma membrane, plastid, vacuole	37.3	33.33
KXG33291	Sorghum	mitochondrion, plasma membrane, plastid, vacuole	37.84	33.18
TraesCS3A01G284900.1	Wheat	plastid	36.76	32.85
TraesCS3D01G284700.1	Wheat	plastid	36.76	32.85
Solyc03g120870.2.1	Tomato	extracellular, peroxisome, plasma membrane, plastid	36.76	32.69
TraesCS3B01G317700.2	Wheat	plastid	21.08	17.97

Protein Annotations

EnsemblPlants:Bra003530.1	EnsemblPlants:Bra003530.1-P	EnsemblPlantsGene:Bra003530	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0016020	GO:GO:0016021	InterPro:CASP/CASPL	InterPro:CASP_dom	PANTHER:PTHR11615	PANTHER:PTHR11615:SF118
PFAM:PF04535	SEG:seg	TIGRFAMs:TIGR01569	TMHMM:TMhelix	UniParc:UPI00025419C1	UniProt:M4CH47
MapMan:35.1	:	:	:	:	:

Description

AT1G79780 (E=6e-065) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: integral membrane family protein (TAIR:AT3G16300.1); Has 167 Blast hits to 167 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

Coordinates

chrA07:+:13648495..13649271

Molecular Weight (calculated)

20219.9 Da

IEP (calculated)

9.033

GRAVY (calculated)

0.490

Length

185 amino acids

Sequence
(BLAST)

001: MNRNGEEEVA EKRRRRRREG VQVSLRGGCL AASATAIAVM LMATEKGVAD IYGLPLPLNS SWSFSPSYQY VVGACTVTIL YSLLHLCLGI YRLLTGSPIT
101: PSRSQAWLCF IFDQLFSYLI MSAGSAGIGV TNLNKTGIKH TPLPDFCKTL SYFCNHVALS LLLVLLSFIF LASSSLFNVL VLSTL

Best Arabidopsis Sequence Match ( AT1G79780.1 )
(BLAST)

001: MTSNGEGGEV VAKRRRKGIK ELVQVALRGG CLAASATAMA VMLTATEEGV ADIYGFKLTL SSNWSFSPSY QYVVGACAGT VLYSLLQLCL GVYRLVTGSP
101: ITPSRFQAWL CFTSDQLFCY LMMSAGSAGS GVTNLNKTGI RHTPLPDFCK TLSSFCNHVA LSLLLVFLSF IFLASSSFFT VLVLSTP

Arabidopsis Description

CASP-like protein 3A2 [Source:UniProtKB/Swiss-Prot;Acc:Q1PFB8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.