Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- cytosol 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82409 | Canola | cytosol, peroxisome, plasma membrane | 97.74 | 97.74 |
| Bra027175.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 72.88 | 61.72 |
| AT3G16300.1 | Thale cress | cytosol, peroxisome, plasma membrane | 71.75 | 59.91 |
| VIT_09s0002g03780.t01 | Wine grape | peroxisome, plastid, vacuole | 43.5 | 36.67 |
| Bra003530.1-P | Field mustard | plasma membrane | 36.72 | 35.14 |
| KRH47229 | Soybean | cytosol, peroxisome, plasma membrane | 39.55 | 33.65 |
| TraesCS3A01G284900.1 | Wheat | plastid | 38.42 | 32.85 |
| Os01t0725400-01 | Rice | golgi, plasma membrane, vacuole | 37.29 | 32.35 |
| PGSC0003DMT400006497 | Potato | plasma membrane | 36.72 | 32.34 |
| Solyc03g120870.2.1 | Tomato | extracellular, peroxisome, plasma membrane, plastid | 37.85 | 32.21 |
| TraesCS3B01G318800.1 | Wheat | cytosol, plasma membrane, plastid, vacuole | 37.29 | 31.88 |
| TraesCS3D01G284700.1 | Wheat | plastid | 36.72 | 31.4 |
| KXG33291 | Sorghum | mitochondrion, plasma membrane, plastid, vacuole | 37.29 | 31.28 |
| GSMUA_Achr4P08280_001 | Banana | peroxisome, plasma membrane, plastid | 38.98 | 30.94 |
| TraesCS3B01G317700.2 | Wheat | plastid | 22.03 | 17.97 |
Protein Annotations
| EnsemblPlants:Bra001627.1 | EnsemblPlants:Bra001627.1-P | EnsemblPlantsGene:Bra001627 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:CASP/CASPL | InterPro:CASP_dom | PANTHER:PTHR11615 | PANTHER:PTHR11615:SF118 |
| PFAM:PF04535 | SEG:seg | TIGRFAMs:TIGR01569 | TMHMM:TMhelix | UniParc:UPI0002540AC1 | UniProt:M4CBP7 |
| MapMan:35.1 | : | : | : | : | : |
Description
AT3G16300 (E=1e-057) | integral membrane family protein
Coordinates
chrA03:-:17515597..17516292
Molecular Weight (calculated)
19363.7 Da
IEP (calculated)
7.881
GRAVY (calculated)
0.479
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKATEQKKN SITVGETKLD IRDVVTTTYD GDNPRETSMT TLYGFEFQLH AVWSLSDSLI YLVVVTSATV IYSLLQLVLS GTRLMRKTLV VPTRTQAWFC
101: FVADHILGCA MVSGGSAALG VTNMNRTGIR HMPLPNFCKS LGFFCDHLAI SVVFALFAFL LLAASSILDV LRLSGDC
101: FVADHILGCA MVSGGSAALG VTNMNRTGIR HMPLPNFCKS LGFFCDHLAI SVVFALFAFL LLAASSILDV LRLSGDC
001: MAKAAEQKQN PTVASAEAKL DIRDVVNTAI TYGEDNRHGG GKRNDVAMFV LRAMCMAVST VAVTLMVTAR ETSMTTLYGF EFQLHAVWSL SDSLIYLVVV
101: SSATVLYSLI QLIISGTRLM RKSPVIPTRT QAWFCFVADQ IIGYAMVSGG SAALGVTNMN RTGIRHMPLP NFCKSLGFFC DHLAGSIVFA LFAFLLLAAS
201: SLLDVLHLSR HR
101: SSATVLYSLI QLIISGTRLM RKSPVIPTRT QAWFCFVADQ IIGYAMVSGG SAALGVTNMN RTGIRHMPLP NFCKSLGFFC DHLAGSIVFA LFAFLLLAAS
201: SLLDVLHLSR HR
Arabidopsis Description
CASP-like protein 3A1 [Source:UniProtKB/Swiss-Prot;Acc:Q3EB59]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.