CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

plastid 1
cytosol 1
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g03780.t01	Wine grape	peroxisome, plastid, vacuole	65.38	64.76
PGSC0003DMT400006497	Potato	plasma membrane	54.81	56.72
Solyc03g120870.2.1	Tomato	extracellular, peroxisome, plasma membrane, plastid	55.29	55.29
Bra003530.1-P	Field mustard	plasma membrane	43.27	48.65
GSMUA_Achr4P08280_001	Banana	peroxisome, plasma membrane, plastid	51.44	47.98
AT1G79780.1	Thale cress	plasma membrane	42.79	47.59
TraesCS3B01G318800.1	Wheat	cytosol, plasma membrane, plastid, vacuole	46.15	46.38
Os01t0725400-01	Rice	golgi, plasma membrane, vacuole	45.19	46.08
TraesCS3A01G284900.1	Wheat	plastid	45.19	45.41
TraesCS3D01G284700.1	Wheat	plastid	45.19	45.41
KXG33291	Sorghum	mitochondrion, plasma membrane, plastid, vacuole	44.71	44.08
Bra027175.1-P	Field mustard	cytosol, peroxisome, plasma membrane	44.23	44.02
CDX67924	Canola	nucleus	42.79	43.2
AT3G16300.1	Thale cress	cytosol, peroxisome, plasma membrane	43.75	42.92
CDX82409	Canola	cytosol, peroxisome, plasma membrane	34.13	40.11
Bra001627.1-P	Field mustard	cytosol, peroxisome, plasma membrane	33.65	39.55
CDY30156	Canola	cytosol, peroxisome, plasma membrane	44.71	37.8
CDX75874	Canola	plasma membrane	37.02	37.75
CDX79414	Canola	mitochondrion	42.79	24.52
TraesCS3B01G317700.2	Wheat	plastid	25.0	23.96

Protein Annotations

EntrezGene:100783028	MapMan:35.1	EMBL:ACUP02004142	InterPro:CASP/CASPL	InterPro:CASP_dom	EnsemblPlantsGene:GLYMA_07G017000
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0016020
GO:GO:0016021	GO:GO:0051536	UniProt:I1KGK4	EnsemblPlants:KRH47229	ProteinID:KRH47229	ProteinID:KRH47229.1
PFAM:PF04535	PANTHER:PTHR11615	PANTHER:PTHR11615:SF118	TIGRFAMs:TIGR01569	TMHMM:TMhelix	UniParc:UPI0002337F18
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:1380024..1382803

Molecular Weight (calculated)

22416.3 Da

IEP (calculated)

8.762

GRAVY (calculated)

0.411

Length

208 amino acids

Sequence
(BLAST)

001: MVNEQRIQEE AKVAALECSG TMSGPLVGAA ASAGTRRRRR AEAMQLVLRA LCMASSVVAI SLMVTAKESS SVSIYGFLLP LHSKWSFSES YEYLVGVSAA
101: VAAHSLLQLL IGISRFLRMS SMIPSRNHAW LIFAGDQAFA YALMSAGSAA SGVTNLNRTG IRHTALPDFC KPLHNFCDHV AISIAFTFTS CFLLATSAVQ
201: DVIWLSQH

Best Arabidopsis Sequence Match ( AT3G16300.1 )
(BLAST)

001: MAKAAEQKQN PTVASAEAKL DIRDVVNTAI TYGEDNRHGG GKRNDVAMFV LRAMCMAVST VAVTLMVTAR ETSMTTLYGF EFQLHAVWSL SDSLIYLVVV
101: SSATVLYSLI QLIISGTRLM RKSPVIPTRT QAWFCFVADQ IIGYAMVSGG SAALGVTNMN RTGIRHMPLP NFCKSLGFFC DHLAGSIVFA LFAFLLLAAS
201: SLLDVLHLSR HR

Arabidopsis Description

CASP-like protein 3A1 [Source:UniProtKB/Swiss-Prot;Acc:Q3EB59]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.