Factsheet for Solyc03g120870.2.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, extracellular, plasma membrane

Predictor Summary:

nucleus 2
plastid 2
extracellular 2
plasma membrane 3
endoplasmic reticulum 1
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, peroxisome, plasma membrane, plastid
Any Predictor:	nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	extracellular
Plant-mPloc:	nucleus, plasma membrane, plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400006497	Potato	plasma membrane	89.42	92.54
VIT_09s0002g03780.t01	Wine grape	peroxisome, plastid, vacuole	61.54	60.95
KRH47229	Soybean	cytosol, peroxisome, plasma membrane	55.29	55.29
GSMUA_Achr4P08280_001	Banana	peroxisome, plasma membrane, plastid	49.04	45.74
Os01t0725400-01	Rice	golgi, plasma membrane, vacuole	44.71	45.59
KXG33291	Sorghum	mitochondrion, plasma membrane, plastid, vacuole	44.71	44.08
TraesCS3D01G284700.1	Wheat	plastid	43.75	43.96
TraesCS3B01G318800.1	Wheat	cytosol, plasma membrane, plastid, vacuole	43.27	43.48
TraesCS3A01G284900.1	Wheat	plastid	42.31	42.51
AT1G79780.1	Thale cress	plasma membrane	37.5	41.71
AT3G16300.1	Thale cress	cytosol, peroxisome, plasma membrane	40.87	40.09
Bra027175.1-P	Field mustard	cytosol, peroxisome, plasma membrane	38.94	38.76
CDX82409	Canola	cytosol, peroxisome, plasma membrane	32.69	38.42
Bra001627.1-P	Field mustard	cytosol, peroxisome, plasma membrane	32.21	37.85
Bra003530.1-P	Field mustard	plasma membrane	32.69	36.76
CDX67924	Canola	nucleus	33.65	33.98
CDX75874	Canola	plasma membrane	33.17	33.82
CDY30156	Canola	cytosol, peroxisome, plasma membrane	38.94	32.93
TraesCS3B01G317700.2	Wheat	plastid	26.92	25.81
CDX79414	Canola	mitochondrion	33.65	19.28

Protein Annotations

EnsemblPlants:Solyc03g120870.2.1	EnsemblPlantsGene:Solyc03g120870.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0016020	GO:GO:0016021	GO:GO:0051536	InterPro:CASP/CASPL	InterPro:CASP_dom
PANTHER:PTHR11615	PANTHER:PTHR11615:SF118	PFAM:PF04535	SEG:seg	TIGRFAMs:TIGR01569	TMHMM:TMhelix
UniParc:UPI0002766F49	UniProt:K4BMN6	MapMan:35.1	:	:	:

Description

CASP-like protein [Source:UniProtKB/TrEMBL;Acc:K4BMN6]

Coordinates

chr3:-:69105758..69107462

Molecular Weight (calculated)

22345.4 Da

IEP (calculated)

10.229

GRAVY (calculated)

0.509

Length

208 amino acids

Sequence
(BLAST)

001: MINGKNPPDV GIQLPESKMG IDTVTDSSSG PPVRNVNGKA QVMQVILRTL CLVTSVTALS LMVTAKQAST ITVLGFNIPL HSKWSFSRSF EYLVGISAAV
101: ALHLILQLLI SGSRLVRGSP TISSRNHGWL IFAGDQVFAL ALMSAGSSAS SVSSLNHTGI RHTALPNFCK PLHHFCDRVS ASIVFTFFSC FLLAILVVLD
201: VLWLSSKH

Best Arabidopsis Sequence Match ( AT3G16300.1 )
(BLAST)

001: MAKAAEQKQN PTVASAEAKL DIRDVVNTAI TYGEDNRHGG GKRNDVAMFV LRAMCMAVST VAVTLMVTAR ETSMTTLYGF EFQLHAVWSL SDSLIYLVVV
101: SSATVLYSLI QLIISGTRLM RKSPVIPTRT QAWFCFVADQ IIGYAMVSGG SAALGVTNMN RTGIRHMPLP NFCKSLGFFC DHLAGSIVFA LFAFLLLAAS
201: SLLDVLHLSR HR

Arabidopsis Description

CASP-like protein 3A1 [Source:UniProtKB/Swiss-Prot;Acc:Q3EB59]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.