Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G16300.1 | Thale cress | cytosol, peroxisome, plasma membrane | 82.78 | 81.6 |
| CDY30156 | Canola | cytosol, peroxisome, plasma membrane | 93.78 | 79.67 |
| Bra001627.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 61.72 | 72.88 |
| VIT_09s0002g03780.t01 | Wine grape | peroxisome, plastid, vacuole | 46.89 | 46.67 |
| KRH47229 | Soybean | cytosol, peroxisome, plasma membrane | 44.02 | 44.23 |
| Bra003530.1-P | Field mustard | plasma membrane | 37.32 | 42.16 |
| TraesCS3A01G284900.1 | Wheat | plastid | 39.71 | 40.1 |
| TraesCS3B01G318800.1 | Wheat | cytosol, plasma membrane, plastid, vacuole | 39.23 | 39.61 |
| TraesCS3D01G284700.1 | Wheat | plastid | 38.76 | 39.13 |
| Solyc03g120870.2.1 | Tomato | extracellular, peroxisome, plasma membrane, plastid | 38.76 | 38.94 |
| PGSC0003DMT400006497 | Potato | plasma membrane | 36.84 | 38.31 |
| KXG33291 | Sorghum | mitochondrion, plasma membrane, plastid, vacuole | 37.8 | 37.44 |
| Os01t0725400-01 | Rice | golgi, plasma membrane, vacuole | 36.36 | 37.25 |
| GSMUA_Achr4P08280_001 | Banana | peroxisome, plasma membrane, plastid | 38.76 | 36.32 |
| TraesCS3B01G317700.2 | Wheat | plastid | 23.92 | 23.04 |
Protein Annotations
| EnsemblPlants:Bra027175.1 | EnsemblPlants:Bra027175.1-P | EnsemblPlantsGene:Bra027175 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:CASP/CASPL | InterPro:CASP_dom | PANTHER:PTHR11615 | PANTHER:PTHR11615:SF118 |
| PFAM:PF04535 | SEG:seg | TIGRFAMs:TIGR01569 | TMHMM:TMhelix | UniParc:UPI0002547835 | UniProt:M4EEG3 |
| MapMan:35.1 | : | : | : | : | : |
Description
AT3G16300 (E=5e-077) | integral membrane family protein
Coordinates
chrA05:+:19536177..19536890
Molecular Weight (calculated)
22771.0 Da
IEP (calculated)
9.261
GRAVY (calculated)
0.454
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKATEHKQN SQTVEVTKLD IRDVITTATT YGEVNRHGGK RNDVAMFVLR AMCMAASAAA VSLMVTARET SMTSLYGFEF QLHAVWSLSD SLIYLVAVSS
101: ATVIYSLLQL ILSGTRLMRR SPVIPTRTQA WFCFAADQIL GYAMVSGGSA ALGVTNMNRT GIRHMPLPNF CKSLGFFCDH LAISVVFALL AFLLLAASSI
201: LDVLHLSRN
101: ATVIYSLLQL ILSGTRLMRR SPVIPTRTQA WFCFAADQIL GYAMVSGGSA ALGVTNMNRT GIRHMPLPNF CKSLGFFCDH LAISVVFALL AFLLLAASSI
201: LDVLHLSRN
001: MAKAAEQKQN PTVASAEAKL DIRDVVNTAI TYGEDNRHGG GKRNDVAMFV LRAMCMAVST VAVTLMVTAR ETSMTTLYGF EFQLHAVWSL SDSLIYLVVV
101: SSATVLYSLI QLIISGTRLM RKSPVIPTRT QAWFCFVADQ IIGYAMVSGG SAALGVTNMN RTGIRHMPLP NFCKSLGFFC DHLAGSIVFA LFAFLLLAAS
201: SLLDVLHLSR HR
101: SSATVLYSLI QLIISGTRLM RKSPVIPTRT QAWFCFVADQ IIGYAMVSGG SAALGVTNMN RTGIRHMPLP NFCKSLGFFC DHLAGSIVFA LFAFLLLAAS
201: SLLDVLHLSR HR
Arabidopsis Description
CASP-like protein 3A1 [Source:UniProtKB/Swiss-Prot;Acc:Q3EB59]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.