Factsheet for PGSC0003DMT400006497

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g120870.2.1	Tomato	extracellular, peroxisome, plasma membrane, plastid	92.54	89.42
VIT_09s0002g03780.t01	Wine grape	peroxisome, plastid, vacuole	60.7	58.1
KRH47229	Soybean	cytosol, peroxisome, plasma membrane	56.72	54.81
GSMUA_Achr4P08280_001	Banana	peroxisome, plasma membrane, plastid	49.75	44.84
Os01t0725400-01	Rice	golgi, plasma membrane, vacuole	44.78	44.12
KXG33291	Sorghum	mitochondrion, plasma membrane, plastid, vacuole	45.27	43.13
TraesCS3D01G284700.1	Wheat	plastid	43.78	42.51
TraesCS3B01G318800.1	Wheat	cytosol, plasma membrane, plastid, vacuole	43.28	42.03
TraesCS3A01G284900.1	Wheat	plastid	42.29	41.06
AT1G79780.1	Thale cress	plasma membrane	37.81	40.64
AT3G16300.1	Thale cress	cytosol, peroxisome, plasma membrane	40.8	38.68
Bra027175.1-P	Field mustard	cytosol, peroxisome, plasma membrane	38.31	36.84
CDX82409	Canola	cytosol, peroxisome, plasma membrane	32.34	36.72
Bra001627.1-P	Field mustard	cytosol, peroxisome, plasma membrane	32.34	36.72
Bra003530.1-P	Field mustard	plasma membrane	33.33	36.22
CDX67924	Canola	nucleus	34.33	33.5
CDX75874	Canola	plasma membrane	33.83	33.33
CDY30156	Canola	cytosol, peroxisome, plasma membrane	38.31	31.3
TraesCS3B01G317700.2	Wheat	plastid	27.36	25.35
CDX79414	Canola	mitochondrion	33.83	18.73

Protein Annotations

EnsemblPlants:PGSC0003DMT400006497	EnsemblPlantsGene:PGSC0003DMG400002535	EntrezGene:102582702	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0016020	GO:GO:0016021	InterPro:CASP/CASPL	InterPro:CASP_dom	PANTHER:PTHR11615	PANTHER:PTHR11615:SF118
PFAM:PF04535	PGSC:PGSC0003DMG400002535	RefSeq:XP_006343052.1	SEG:seg	TIGRFAMs:TIGR01569	TMHMM:TMhelix
UniParc:UPI0002967403	UniProt:M0ZRG4	MapMan:35.1	:	:	:

Description

UPF0497 membrane protein 14 [Source:PGSC_GENE;Acc:PGSC0003DMG400002535]

Coordinates

chr3:-:60178016..60179851

Molecular Weight (calculated)

21719.6 Da

IEP (calculated)

8.036

GRAVY (calculated)

0.486

Length

201 amino acids

Sequence
(BLAST)

001: MINGKNPPDV GIQLPESKME MDSPLDGNVN GKAEVMQVVL RALCLVTSVT ALSLMVTAEQ ASTITVLGFN IPLHSKWSFS HSFEYLVGIS AAVALHLILQ
101: LLISGSRLVR GSPTISSRNH GWLIFAGDEV FALALMSAGS SASSVSSLNH SGIRHTALPN FCKPLHHFCD RVSTSIVFTF FSCFLLAILV VLDVRWLSSK
201: H

Best Arabidopsis Sequence Match ( AT3G16300.1 )
(BLAST)

001: MAKAAEQKQN PTVASAEAKL DIRDVVNTAI TYGEDNRHGG GKRNDVAMFV LRAMCMAVST VAVTLMVTAR ETSMTTLYGF EFQLHAVWSL SDSLIYLVVV
101: SSATVLYSLI QLIISGTRLM RKSPVIPTRT QAWFCFVADQ IIGYAMVSGG SAALGVTNMN RTGIRHMPLP NFCKSLGFFC DHLAGSIVFA LFAFLLLAAS
201: SLLDVLHLSR HR

Arabidopsis Description

CASP-like protein 3A1 [Source:UniProtKB/Swiss-Prot;Acc:Q3EB59]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.