Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plasma membrane, vacuole, plastid
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- extracellular 1
- golgi 1
- plasma membrane 2
- endoplasmic reticulum 1
- vacuole 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G284700.1 | Wheat | plastid | 97.1 | 97.1 |
| TraesCS3A01G284900.1 | Wheat | plastid | 96.14 | 96.14 |
| Os01t0725400-01 | Rice | golgi, plasma membrane, vacuole | 74.4 | 75.49 |
| KXG33291 | Sorghum | mitochondrion, plasma membrane, plastid, vacuole | 71.5 | 70.14 |
| TraesCS3B01G317700.2 | Wheat | plastid | 60.39 | 57.6 |
| VIT_09s0002g03780.t01 | Wine grape | peroxisome, plastid, vacuole | 49.28 | 48.57 |
| GSMUA_Achr4P08280_001 | Banana | peroxisome, plasma membrane, plastid | 52.17 | 48.43 |
| KRH47229 | Soybean | cytosol, peroxisome, plasma membrane | 46.38 | 46.15 |
| PGSC0003DMT400006497 | Potato | plasma membrane | 42.03 | 43.28 |
| Solyc03g120870.2.1 | Tomato | extracellular, peroxisome, plasma membrane, plastid | 43.48 | 43.27 |
| Bra027175.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 39.61 | 39.23 |
| AT1G79780.1 | Thale cress | plasma membrane | 35.27 | 39.04 |
| AT3G16300.1 | Thale cress | cytosol, peroxisome, plasma membrane | 39.13 | 38.21 |
| Bra003530.1-P | Field mustard | plasma membrane | 33.33 | 37.3 |
| CDX82409 | Canola | cytosol, peroxisome, plasma membrane | 31.88 | 37.29 |
| Bra001627.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 31.88 | 37.29 |
| CDX75874 | Canola | plasma membrane | 36.72 | 37.25 |
| CDY30156 | Canola | cytosol, peroxisome, plasma membrane | 41.06 | 34.55 |
| CDX67924 | Canola | nucleus | 34.3 | 34.47 |
| CDX79414 | Canola | mitochondrion | 35.27 | 20.11 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G318800.1 | EnsemblPlantsGene:TraesCS3B01G318800 | InterPro:CASP/CASPL | InterPro:CASP_dom | PANTHER:PTHR11615 | PANTHER:PTHR11615:SF118 |
| PFAM:PF04535 | SEG:seg | TIGRFAMs:TIGR01569 | TMHMM:TMhelix | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr3B:-:513669020..513671341
Molecular Weight (calculated)
21618.8 Da
IEP (calculated)
9.795
GRAVY (calculated)
0.656
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSFANGQNG SELGIQMPAM GGNAVLESPT TSVAPRCPRL DMAMVATRAA ALVMALISMS LMVSAKQRGS LIIFGIEIPL YAKWSLSDSL KSLVGISAAA
101: AAYSLAQLLS IAYKALKKVP VVPSRRYAWM LLAGDQVFAY AMLSAGSAAA AVANLNRTGI RHTALPNFCK PLPRFCDLSA ASIACAFLSC AFLAASAVID
201: VIWLSNL
101: AAYSLAQLLS IAYKALKKVP VVPSRRYAWM LLAGDQVFAY AMLSAGSAAA AVANLNRTGI RHTALPNFCK PLPRFCDLSA ASIACAFLSC AFLAASAVID
201: VIWLSNL
001: MAKAAEQKQN PTVASAEAKL DIRDVVNTAI TYGEDNRHGG GKRNDVAMFV LRAMCMAVST VAVTLMVTAR ETSMTTLYGF EFQLHAVWSL SDSLIYLVVV
101: SSATVLYSLI QLIISGTRLM RKSPVIPTRT QAWFCFVADQ IIGYAMVSGG SAALGVTNMN RTGIRHMPLP NFCKSLGFFC DHLAGSIVFA LFAFLLLAAS
201: SLLDVLHLSR HR
101: SSATVLYSLI QLIISGTRLM RKSPVIPTRT QAWFCFVADQ IIGYAMVSGG SAALGVTNMN RTGIRHMPLP NFCKSLGFFC DHLAGSIVFA LFAFLLLAAS
201: SLLDVLHLSR HR
Arabidopsis Description
CASP-like protein 3A1 [Source:UniProtKB/Swiss-Prot;Acc:Q3EB59]
SUBAcon: [cytosol,plasma membrane,peroxisome]
SUBAcon: [cytosol,plasma membrane,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.