Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003530.1-P | Field mustard | plasma membrane | 77.54 | 78.38 |
| CDX67924 | Canola | nucleus | 77.01 | 69.9 |
| KRH47229 | Soybean | cytosol, peroxisome, plasma membrane | 47.59 | 42.79 |
| VIT_09s0002g03780.t01 | Wine grape | peroxisome, plastid, vacuole | 47.59 | 42.38 |
| Os01t0725400-01 | Rice | golgi, plasma membrane, vacuole | 43.32 | 39.71 |
| CDX79414 | Canola | mitochondrion | 73.8 | 38.02 |
| PGSC0003DMT400006497 | Potato | plasma membrane | 40.64 | 37.81 |
| AT3G16300.1 | Thale cress | cytosol, peroxisome, plasma membrane | 42.78 | 37.74 |
| Solyc03g120870.2.1 | Tomato | extracellular, peroxisome, plasma membrane, plastid | 41.71 | 37.5 |
| KXG33291 | Sorghum | mitochondrion, plasma membrane, plastid, vacuole | 41.71 | 36.97 |
| GSMUA_Achr4P08280_001 | Banana | peroxisome, plasma membrane, plastid | 43.85 | 36.77 |
| TraesCS3B01G318800.1 | Wheat | cytosol, plasma membrane, plastid, vacuole | 39.04 | 35.27 |
| TraesCS3A01G284900.1 | Wheat | plastid | 38.5 | 34.78 |
| TraesCS3D01G284700.1 | Wheat | plastid | 38.5 | 34.78 |
| TraesCS3B01G317700.2 | Wheat | plastid | 22.99 | 19.82 |
Protein Annotations
| MapMan:35.1 | EntrezGene:844317 | ProteinID:AAF68111.1 | ProteinID:AEE36297.1 | ArrayExpress:AT1G79780 | EnsemblPlantsGene:AT1G79780 |
| RefSeq:AT1G79780 | TAIR:AT1G79780 | RefSeq:AT1G79780-TAIR-G | EnsemblPlants:AT1G79780.1 | TAIR:AT1G79780.1 | InterPro:CASP/CASPL |
| InterPro:CASP_dom | EMBL:DQ446445 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005623 |
| GO:GO:0005886 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0051536 | RefSeq:NP_178096.2 | PFAM:PF04535 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0025022 |
| PANTHER:PTHR11615 | PANTHER:PTHR11615:SF118 | UniProt:Q1PFB8 | TIGRFAMs:TIGR01569 | TMHMM:TMhelix | UniParc:UPI0000D5BC4D |
| SEG:seg | : | : | : | : | : |
Description
CASP-like protein 3A2 [Source:UniProtKB/Swiss-Prot;Acc:Q1PFB8]
Coordinates
chr1:+:30015712..30016856
Molecular Weight (calculated)
20012.5 Da
IEP (calculated)
8.677
GRAVY (calculated)
0.534
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSNGEGGEV VAKRRRKGIK ELVQVALRGG CLAASATAMA VMLTATEEGV ADIYGFKLTL SSNWSFSPSY QYVVGACAGT VLYSLLQLCL GVYRLVTGSP
101: ITPSRFQAWL CFTSDQLFCY LMMSAGSAGS GVTNLNKTGI RHTPLPDFCK TLSSFCNHVA LSLLLVFLSF IFLASSSFFT VLVLSTP
101: ITPSRFQAWL CFTSDQLFCY LMMSAGSAGS GVTNLNKTGI RHTPLPDFCK TLSSFCNHVA LSLLLVFLSF IFLASSSFFT VLVLSTP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.