Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS1A01G044200.1 | Wheat | cytosol | 99.67 | 98.36 |
TraesCS1B01G057100.1 | Wheat | cytosol | 65.78 | 97.06 |
TraesCS3D01G145000.1 | Wheat | cytosol | 96.01 | 94.75 |
Os02t0135800-02 | Rice | cytosol | 95.02 | 93.77 |
Zm00001d039365_P001 | Maize | nucleus | 94.68 | 93.44 |
EES00059 | Sorghum | cytosol | 94.02 | 92.79 |
Zm00001d008932_P001 | Maize | extracellular | 93.69 | 92.46 |
GSMUA_Achr7P26060_001 | Banana | cytosol | 83.72 | 83.44 |
VIT_14s0066g02380.t01 | Wine grape | cytosol | 82.06 | 82.06 |
GSMUA_Achr9P19430_001 | Banana | cytosol | 82.06 | 81.79 |
VIT_13s0106g00770.t01 | Wine grape | cytosol | 81.73 | 81.73 |
KRH46249 | Soybean | endoplasmic reticulum, nucleus | 81.73 | 81.73 |
KRG98707 | Soybean | endoplasmic reticulum, nucleus | 81.4 | 81.4 |
KRG98686 | Soybean | endoplasmic reticulum, nucleus | 81.06 | 81.06 |
KRH46229 | Soybean | cytosol | 81.06 | 81.06 |
VIT_19s0015g00810.t01 | Wine grape | cytosol | 80.73 | 79.67 |
PGSC0003DMT400003265 | Potato | cytosol | 79.73 | 79.47 |
Solyc02g087300.1.1 | Tomato | extracellular, nucleus | 79.73 | 79.47 |
AT2G30050.1 | Thale cress | cytosol | 78.41 | 78.15 |
CDY02025 | Canola | cytosol | 78.41 | 77.89 |
CDY24035 | Canola | cytosol | 77.41 | 77.41 |
CDY37530 | Canola | cytosol | 77.41 | 77.15 |
Bra022774.1-P | Field mustard | cytosol | 77.08 | 77.08 |
CDX84863 | Canola | cytosol | 77.08 | 77.08 |
Bra039126.1-P | Field mustard | cytosol | 77.08 | 76.82 |
CDY49046 | Canola | cytosol | 76.74 | 76.49 |
CDX97854 | Canola | cytosol | 75.75 | 75.75 |
AT3G01340.1 | Thale cress | cytosol | 75.75 | 75.5 |
PGSC0003DMT400006490 | Potato | cytosol | 74.42 | 74.42 |
Solyc03g120900.1.1 | Tomato | cytosol | 73.42 | 73.42 |
CDY10705 | Canola | cytosol | 77.74 | 64.11 |
Bra018343.1-P | Field mustard | cytosol | 77.74 | 64.11 |
GSMUA_Achr1P22590_001 | Banana | plastid | 82.39 | 58.63 |
TraesCS2D01G490600.1 | Wheat | cytosol, golgi | 58.8 | 55.84 |
GSMUA_Achr8P31110_001 | Banana | cytosol | 23.92 | 54.14 |
CDY29706 | Canola | cytosol, plastid | 76.08 | 33.19 |
Bra021603.1-P | Field mustard | plastid | 76.08 | 33.09 |
TraesCS3D01G229700.1 | Wheat | cytosol | 21.93 | 20.43 |
Protein Annotations
Gene3D:2.130.10.10 | MapMan:22.4.1.1 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005488 |
GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 |
GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 |
GO:GO:0016192 | GO:GO:0030127 | GO:GO:0090114 | GO:GO:1904263 | InterPro:IPR001680 | InterPro:IPR015943 |
InterPro:IPR017986 | PFAM:PF00400 | PRINTS:PR00320 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR11024 |
PANTHER:PTHR11024:SF2 | SMART:SM00320 | SUPFAM:SSF50978 | InterPro:Sec13 | InterPro:Sec13/Seh1_fam | EnsemblPlantsGene:TraesCS1D01G044700 |
EnsemblPlants:TraesCS1D01G044700.1 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | : |
Description
No Description!
Coordinates
chr1D:-:24124808..24125713
Molecular Weight (calculated)
32923.5 Da
IEP (calculated)
6.116
GRAVY (calculated)
-0.335
Length
301 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPHKIETGH QDVVHDIAMD YYGKRIATAS SDNTIKIIGV SGTSHQQLAT LSGHEQIAWA HPKYGSMLAS CSYDGRVIIW KEGSKPDEWA QAHTFNEHKS
101: SVNSIAWAPH ELGLCLACGS SDGNISVFMA RSDGGWETTR IDQAHPVGVT SVSWAPSMAP GALISPGPSG QFEYVQKLAS GGCDNTVKVW KLTNGSWRMD
201: CFPALQMHRD WVRDVAWAPN LGLPKSTIAS ASQDGTVVIW TAPKEGEQWE GRVLNDFRTP VWRLSWSLTG NILAVSDGNN NVTLWKEAVD GEWQQVTTVE
301: P
101: SVNSIAWAPH ELGLCLACGS SDGNISVFMA RSDGGWETTR IDQAHPVGVT SVSWAPSMAP GALISPGPSG QFEYVQKLAS GGCDNTVKVW KLTNGSWRMD
201: CFPALQMHRD WVRDVAWAPN LGLPKSTIAS ASQDGTVVIW TAPKEGEQWE GRVLNDFRTP VWRLSWSLTG NILAVSDGNN NVTLWKEAVD GEWQQVTTVE
301: P
001: MPGQKIETGH EDIVHDVQMD YYGKRIATAS SDCTIKITGV SNNGGSQQLA TLTGHRGPVW EVAWAHPKYG SILASCSYDG QVILWKEGNQ NQWTQDHVFT
101: DHKSSVNSIA WAPHDIGLSL ACGSSDGNIS VFTARADGGW DTSRIDQAHP VGVTSVSWAP ATAPGALVSS GLLDPVYKLA SGGCDNTVKV WKLANGSWKM
201: DCFPALQKHT DWVRDVAWAP NLGLPKSTIA SGSQDGKVII WTVGKEGEQW EGKVLKDFMT PVWRVSWSLT GNLLAVSDGN NNVTVWKEAV DGEWEQVTAV
301: EP
101: DHKSSVNSIA WAPHDIGLSL ACGSSDGNIS VFTARADGGW DTSRIDQAHP VGVTSVSWAP ATAPGALVSS GLLDPVYKLA SGGCDNTVKV WKLANGSWKM
201: DCFPALQKHT DWVRDVAWAP NLGLPKSTIA SGSQDGKVII WTVGKEGEQW EGKVLKDFMT PVWRVSWSLT GNLLAVSDGN NNVTVWKEAV DGEWEQVTAV
301: EP
Arabidopsis Description
SEC13BProtein transport protein SEC13 homolog B [Source:UniProtKB/Swiss-Prot;Acc:O64740]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.