CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
endoplasmic reticulum 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH46249	Soybean	endoplasmic reticulum, nucleus	99.0	99.0
KRG98707	Soybean	endoplasmic reticulum, nucleus	98.67	98.67
KRG98686	Soybean	endoplasmic reticulum, nucleus	97.34	97.34
GSMUA_Achr7P26060_001	Banana	cytosol	86.05	85.76
GSMUA_Achr9P19430_001	Banana	cytosol	85.71	85.43
TraesCS5B01G499200.1	Wheat	cytosol	84.05	82.95
EES00059	Sorghum	cytosol	84.05	82.95
Zm00001d039365_P001	Maize	nucleus	83.72	82.62
Zm00001d008932_P001	Maize	extracellular	83.72	82.62
PGSC0003DMT400006490	Potato	cytosol	82.39	82.39
TraesCS3D01G145000.1	Wheat	cytosol	83.39	82.3
HORVU3Hr1G027730.1	Barley	cytosol	83.06	81.97
TraesCS5A01G485600.1	Wheat	cytosol	83.06	81.97
Os02t0135800-02	Rice	cytosol	82.72	81.64
Solyc03g120900.1.1	Tomato	cytosol	81.4	81.4
TraesCS1D01G044700.1	Wheat	cytosol	81.06	81.06
TraesCS1A01G044200.1	Wheat	cytosol	82.06	80.98
TraesCS3B01G162400.1	Wheat	cytosol	81.73	80.92
TraesCS1B01G057100.1	Wheat	cytosol	51.83	76.47
OQU89582	Sorghum	cytosol	80.07	74.38
GSMUA_Achr1P22590_001	Banana	plastid	85.05	60.52
GSMUA_Achr8P31110_001	Banana	cytosol	24.25	54.89
KRH27852	Soybean	cytosol, nucleus	25.91	23.93
KRH77634	Soybean	cytosol, nucleus	25.58	23.62

Protein Annotations

EntrezGene:100794696	Gene3D:2.130.10.10	MapMan:22.4.1.1	EMBL:ACUP02005329	InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_08G320100
GO:GO:0000139	GO:GO:0003674	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0015031	GO:GO:0016020	GO:GO:0016043
GO:GO:0016192	GO:GO:0030127	GO:GO:0090114	GO:GO:1904263	UniProt:I1KYB6	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRH46229	ProteinID:KRH46229	ProteinID:KRH46229.1	ProteinID:KRH46230.1
PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR11024	PANTHER:PTHR11024:SF2
SMART:SM00320	SUPFAM:SSF50978	InterPro:Sec13	InterPro:Sec13/Seh1_fam	UniParc:UPI0002338CAF	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:43910604..43912649

Molecular Weight (calculated)

32588.2 Da

IEP (calculated)

5.926

GRAVY (calculated)

-0.204

Length

301 amino acids

Sequence
(BLAST)

001: MPSQKVETGH QDTVHDVAMD YYGKRLATAS SDHTIKIIGV SNSASQHLAT LTGHQGPVWQ VVWAHPKFGS LLASCSYDGR VIVWKEGNQN EWTQAHVFDD
101: HKSSVNSVAW APHELGLCLA CGSSDGNISV LTARADGGWD TARIDQAHPV GVTSVSWAPS MAPGALVGAG LLDPVQKLCS GGCDNTVKVW KLNNGLWKMD
201: CFPALQMHTD WVRDVAWAPN LGLPKSTIAS ASQDGKVIIW TVAKEGDQWE GKVLNDFNTP VWRVSWSLTG NILAVADGNN NVTLWKEAVD GEWQQVTTVE
301: P

Best Arabidopsis Sequence Match ( AT2G30050.1 )
(BLAST)

001: MPGQKIETGH EDIVHDVQMD YYGKRIATAS SDCTIKITGV SNNGGSQQLA TLTGHRGPVW EVAWAHPKYG SILASCSYDG QVILWKEGNQ NQWTQDHVFT
101: DHKSSVNSIA WAPHDIGLSL ACGSSDGNIS VFTARADGGW DTSRIDQAHP VGVTSVSWAP ATAPGALVSS GLLDPVYKLA SGGCDNTVKV WKLANGSWKM
201: DCFPALQKHT DWVRDVAWAP NLGLPKSTIA SGSQDGKVII WTVGKEGEQW EGKVLKDFMT PVWRVSWSLT GNLLAVSDGN NNVTVWKEAV DGEWEQVTAV
301: EP

Arabidopsis Description

SEC13BProtein transport protein SEC13 homolog B [Source:UniProtKB/Swiss-Prot;Acc:O64740]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.