Factsheet for PGSC0003DMT400006490

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
endoplasmic reticulum 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g120900.1.1	Tomato	cytosol	96.35	96.35
KRG98707	Soybean	endoplasmic reticulum, nucleus	82.39	82.39
KRH46229	Soybean	cytosol	82.39	82.39
KRH46249	Soybean	endoplasmic reticulum, nucleus	82.39	82.39
KRG98686	Soybean	endoplasmic reticulum, nucleus	81.4	81.4
PGSC0003DMT400003265	Potato	cytosol	81.4	81.13
GSMUA_Achr9P19430_001	Banana	cytosol	78.41	78.15
GSMUA_Achr7P26060_001	Banana	cytosol	78.07	77.81
TraesCS5B01G499200.1	Wheat	cytosol	77.08	76.07
Zm00001d039365_P001	Maize	nucleus	76.74	75.74
EES00059	Sorghum	cytosol	76.74	75.74
HORVU3Hr1G027730.1	Barley	cytosol	76.41	75.41
TraesCS3D01G145000.1	Wheat	cytosol	76.41	75.41
Zm00001d008932_P001	Maize	extracellular	76.41	75.41
Os02t0135800-02	Rice	cytosol	76.08	75.08
TraesCS5A01G485600.1	Wheat	cytosol	76.08	75.08
TraesCS1A01G044200.1	Wheat	cytosol	75.42	74.43
TraesCS1D01G044700.1	Wheat	cytosol	74.42	74.42
TraesCS3B01G162400.1	Wheat	cytosol	75.08	74.34
TraesCS1B01G057100.1	Wheat	cytosol	48.84	72.06
OQU89582	Sorghum	cytosol	73.42	68.21
GSMUA_Achr1P22590_001	Banana	plastid	78.41	55.79
GSMUA_Achr8P31110_001	Banana	cytosol	22.26	50.38
PGSC0003DMT400032040	Potato	cytosol	24.92	20.66

Protein Annotations

EntrezGene:102581372	Gene3D:2.130.10.10	MapMan:22.4.1.1	ProteinID:AFX66988	ProteinID:AFX66988.1	InterPro:Apc4_WD40_dom
InterPro:G-protein_beta_WD-40_rep	GO:GO:0000139	GO:GO:0003674	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006810
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0015031	GO:GO:0016020
GO:GO:0016043	GO:GO:0016192	GO:GO:0030127	GO:GO:0090114	GO:GO:1904263	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	EMBL:JX683424	UniProt:M0ZRF7	PFAM:PF00400	PFAM:PF12894
EnsemblPlantsGene:PGSC0003DMG400002531	PGSC:PGSC0003DMG400002531	EnsemblPlants:PGSC0003DMT400006490	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR11024	PANTHER:PTHR11024:SF2	SMART:SM00320	SUPFAM:SSF50978	InterPro:Sec13	InterPro:Sec13/Seh1_fam
UniParc:UPI0002957239	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_015162260.1

Description

SEC13 family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400002531]

Coordinates

chr3:-:60201638..60204753

Molecular Weight (calculated)

32494.2 Da

IEP (calculated)

5.294

GRAVY (calculated)

-0.085

Length

301 amino acids

Sequence
(BLAST)

001: MPLQKIESGH TDTVHDVAMD YYGKRLATAS SDCTIKITGV SNSSSQLLAT ISGHQGPVWQ VAWAHPKFGS LLASCSSDGK VIIWKEGTQN EWSLARVFDD
101: HKASVNAIAW APHELGLCLA CGSSDGNISI FTARSEDVWE TSRIDQAHPV GVTSVSWAPS TAPGSLVGSD LLNPVLKLAS GGCDNTVKVW KLFDGAWKLD
201: CFPVLQMHTD WVRDVAWAPN LGLPKSTIAS ASEDGRVIIW TVGKEGDQWV GKVLKDFGAP VWRVSWSLTG NILAVADGNN NVTLWNEAVD GEWQPVRTVD
301: T

Best Arabidopsis Sequence Match ( AT2G30050.1 )
(BLAST)

001: MPGQKIETGH EDIVHDVQMD YYGKRIATAS SDCTIKITGV SNNGGSQQLA TLTGHRGPVW EVAWAHPKYG SILASCSYDG QVILWKEGNQ NQWTQDHVFT
101: DHKSSVNSIA WAPHDIGLSL ACGSSDGNIS VFTARADGGW DTSRIDQAHP VGVTSVSWAP ATAPGALVSS GLLDPVYKLA SGGCDNTVKV WKLANGSWKM
201: DCFPALQKHT DWVRDVAWAP NLGLPKSTIA SGSQDGKVII WTVGKEGEQW EGKVLKDFMT PVWRVSWSLT GNLLAVSDGN NNVTVWKEAV DGEWEQVTAV
301: EP

Arabidopsis Description

SEC13BProtein transport protein SEC13 homolog B [Source:UniProtKB/Swiss-Prot;Acc:O64740]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.