Factsheet for PGSC0003DMT400003265

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
endoplasmic reticulum 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006497
PGSC0003DMT400023896
PGSC0003DMT400069203

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30050.1	PGSC0003DMT400023896	AT1G22920.1	21798944
AT2G30050.1	PGSC0003DMT400069203	AT1G22920.1	21798944
AT3G01340.1	PGSC0003DMT400006497	AT3G16300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g087300.1.1	Tomato	extracellular, nucleus	99.01	99.01
VIT_14s0066g02380.t01	Wine grape	cytosol	90.07	90.37
VIT_13s0106g00770.t01	Wine grape	cytosol	89.07	89.37
VIT_19s0015g00810.t01	Wine grape	cytosol	88.74	87.87
GSMUA_Achr9P19430_001	Banana	cytosol	82.78	82.78
CDY02025	Canola	cytosol	82.78	82.51
CDY24035	Canola	cytosol	81.79	82.06
AT2G30050.1	Thale cress	cytosol	81.79	81.79
GSMUA_Achr7P26060_001	Banana	cytosol	81.79	81.79
Bra022774.1-P	Field mustard	cytosol	81.46	81.73
CDX84863	Canola	cytosol	81.46	81.73
PGSC0003DMT400006490	Potato	cytosol	81.13	81.4
Os02t0135800-02	Rice	cytosol	81.46	80.66
EES00059	Sorghum	cytosol	81.46	80.66
TraesCS5B01G499200.1	Wheat	cytosol	81.13	80.33
AT3G01340.1	Thale cress	cytosol	80.13	80.13
CDX97854	Canola	cytosol	79.8	80.07
Zm00001d039365_P001	Maize	nucleus	80.79	80.0
Zm00001d008932_P001	Maize	extracellular	80.79	80.0
TraesCS3D01G145000.1	Wheat	cytosol	80.79	80.0
CDY37530	Canola	cytosol	79.8	79.8
TraesCS1D01G044700.1	Wheat	cytosol	79.47	79.73
HORVU3Hr1G027730.1	Barley	cytosol	80.46	79.67
TraesCS5A01G485600.1	Wheat	cytosol	80.46	79.67
TraesCS1A01G044200.1	Wheat	cytosol	80.46	79.67
CDY49046	Canola	cytosol	79.47	79.47
Bra039126.1-P	Field mustard	cytosol	79.14	79.14
TraesCS3B01G162400.1	Wheat	cytosol	79.47	78.95
TraesCS1B01G057100.1	Wheat	cytosol	53.31	78.92
OQU89582	Sorghum	cytosol	78.15	72.84
CDY10705	Canola	cytosol	82.12	67.95
Bra018343.1-P	Field mustard	cytosol	82.12	67.95
GSMUA_Achr1P22590_001	Banana	plastid	82.12	58.63
GSMUA_Achr8P31110_001	Banana	cytosol	23.51	53.38
CDY29706	Canola	cytosol, plastid	79.47	34.78
Bra021603.1-P	Field mustard	plastid	79.14	34.54
PGSC0003DMT400032040	Potato	cytosol	22.85	19.01

Protein Annotations

EntrezGene:102577858	Gene3D:2.130.10.10	MapMan:22.4.1.1	ProteinID:ABC01897	ProteinID:ABC01897.1	EMBL:DQ294265
InterPro:G-protein_beta_WD-40_rep	GO:GO:0000139	GO:GO:0003674	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006810
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0015031	GO:GO:0016020
GO:GO:0016043	GO:GO:0016192	GO:GO:0030127	GO:GO:0090114	GO:GO:1904263	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	UniProt:M0ZLC3	PFAM:PF00400	EnsemblPlantsGene:PGSC0003DMG400001295	PGSC:PGSC0003DMG400001295
EnsemblPlants:PGSC0003DMT400003265	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR11024	PANTHER:PTHR11024:SF2
SMART:SM00320	SUPFAM:SSF50978	InterPro:Sec13	InterPro:Sec13/Seh1_fam	UniParc:UPI0002960BF1	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_015161664.1	:	:

Description

Protein transport SEC13 [Source:PGSC_GENE;Acc:PGSC0003DMG400001295]

Coordinates

chr2:-:46689496..46692934

Molecular Weight (calculated)

32537.0 Da

IEP (calculated)

6.276

GRAVY (calculated)

-0.254

Length

302 amino acids

Sequence
(BLAST)

001: MPAQKIETGH NDTVHDVTMD YYGKRVATAS SDTTIKITGV SNNATSQHLA TLSGHTGPVW QAAWAHPKFG SILASCSYDG KVIIWKEGNQ NEWTQAHVFS
101: EHKSSVNSIS WAPHELGLCL ACGSSDGNIS VHTARSDGGW DTTRIDQAHP VGVTSVSWAP SMAPGALVGA GVLEPVQKLA SGGCDNTVKV WKLYNGVWKM
201: DCFPALQMHT NWVRDVAWAP NLGLPKSTIA SASEDGTVVI WTVGKEGDQW EGKVLKDFKS PVWRVSWSLT GNLLAVAAGD NNVTLWKEAV DGEWQQASTV
301: DQ

Best Arabidopsis Sequence Match ( AT2G30050.1 )
(BLAST)

001: MPGQKIETGH EDIVHDVQMD YYGKRIATAS SDCTIKITGV SNNGGSQQLA TLTGHRGPVW EVAWAHPKYG SILASCSYDG QVILWKEGNQ NQWTQDHVFT
101: DHKSSVNSIA WAPHDIGLSL ACGSSDGNIS VFTARADGGW DTSRIDQAHP VGVTSVSWAP ATAPGALVSS GLLDPVYKLA SGGCDNTVKV WKLANGSWKM
201: DCFPALQKHT DWVRDVAWAP NLGLPKSTIA SGSQDGKVII WTVGKEGEQW EGKVLKDFMT PVWRVSWSLT GNLLAVSDGN NNVTVWKEAV DGEWEQVTAV
301: EP

Arabidopsis Description

SEC13BProtein transport protein SEC13 homolog B [Source:UniProtKB/Swiss-Prot;Acc:O64740]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.