Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g073150.2.1 | Tomato | cytosol | 98.91 | 98.91 |
| PGSC0003DMT400023896 | Potato | cytosol | 95.37 | 95.37 |
| VIT_03s0038g04360.t01 | Wine grape | cytosol | 87.47 | 89.17 |
| KRH61926 | Soybean | nucleus | 85.29 | 83.69 |
| AT1G22920.1 | Thale cress | cytosol | 81.2 | 83.47 |
| Bra024548.1-P | Field mustard | cytosol | 80.11 | 82.58 |
| CDY04768 | Canola | cytosol | 80.11 | 82.58 |
| CDY21400 | Canola | cytosol | 80.11 | 82.58 |
| GSMUA_Achr10P... | Banana | cytosol | 82.56 | 82.34 |
| AT1G71230.1 | Thale cress | cytosol | 79.84 | 81.84 |
| HORVU3Hr1G054660.1 | Barley | cytosol | 54.22 | 81.56 |
| CDY25761 | Canola | cytosol | 78.75 | 81.18 |
| Os04t0654700-02 | Rice | cytosol | 79.56 | 81.11 |
| HORVU0Hr1G018470.1 | Barley | cytosol | 53.68 | 81.07 |
| Bra012351.1-P | Field mustard | cytosol | 78.47 | 80.9 |
| HORVU6Hr1G023630.1 | Barley | cytosol | 52.32 | 80.0 |
| Zm00001d002027_P002 | Maize | extracellular | 78.47 | 79.56 |
| HORVU7Hr1G078010.1 | Barley | cytosol | 29.43 | 79.41 |
| TraesCS2A01G504600.1 | Wheat | cytosol | 77.66 | 78.3 |
| TraesCS2D01G505300.1 | Wheat | golgi, unclear | 77.11 | 77.75 |
| HORVU1Hr1G008160.1 | Barley | cytosol | 32.15 | 77.63 |
| KXG27287 | Sorghum | cytosol | 78.47 | 77.21 |
| KRH52586 | Soybean | cytosol, nucleus | 85.83 | 77.02 |
| HORVU0Hr1G025410.1 | Barley | cytosol | 61.31 | 74.75 |
| HORVU4Hr1G048730.1 | Barley | cytosol | 61.31 | 74.5 |
| HORVU3Hr1G113750.1 | Barley | cytosol | 30.52 | 72.26 |
| HORVU2Hr1G056160.5 | Barley | cytosol | 31.34 | 68.45 |
| HORVU2Hr1G112000.1 | Barley | cytosol | 69.21 | 63.82 |
| HORVU2Hr1G067660.1 | Barley | cytosol, peroxisome | 11.99 | 62.86 |
| HORVU3Hr1G021300.1 | Barley | cytosol, plastid | 24.8 | 55.15 |
| HORVU4Hr1G047410.2 | Barley | cytosol, mitochondrion, peroxisome | 25.34 | 36.76 |
| PGSC0003DMT400020708 | Potato | cytosol | 24.25 | 28.53 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400069203 | EnsemblPlantsGene:PGSC0003DMG400026918 | EntrezGene:102602261 | Gene3D:3.40.140.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR037518 | InterPro:JAMM/MPN+_dom | InterPro:MPN | MEROPS:M67.002 | ncoils:Coil |
| PANTHER:PTHR10410 | PANTHER:PTHR10410:SF14 | PFAM:PF01398 | PFscan:PS50249 | PGSC:PGSC0003DMG400026918 | RefSeq:XP_006347307.1 |
| SMART:SM00232 | SUPFAM:SSF102712 | UniParc:UPI000294E684 | UniProt:M1CK31 | MapMan:19.2.3.3.1.5 | : |
Description
CSN5 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400026918]
Coordinates
chr6:-:53706649..53711678
Molecular Weight (calculated)
40785.9 Da
IEP (calculated)
4.764
GRAVY (calculated)
-0.417
Length
367 amino acids
Sequence
(BLAST)
(BLAST)
001: MDALNSYASS AAMAQQTWEL ENNIVTIDAP SGSTPENSAS DAIFHYDDAA QTKFQREKPW ASDPHYFKRV KISALALLKM VVHARSGGTI EVMGLMQGKT
101: DGDAIIVMDA FALPVEGTET RVNAQADAYE YMVEYSQTNK QAGRLENVVG WYHSHPGYGC WLSGIDVSTQ MLNQQYQEPF LAVVIDPTRT VSAGKVEIGA
201: FRTYPEGYKP PDDPISEYQT IPLNKIEDFG VHCKQYYSLD ITYFKSSLDC HLLDLLWNKY WVNTLSSSPL LGNGDYVAGQ ISDLAEKLEH AENQLSNSRY
301: ASLMAPPQRK KEEESQLAKI TRDSAKITVE QVHGLMSQVI KDILFNSVGK SSKSQTEPSG PEPMIES
101: DGDAIIVMDA FALPVEGTET RVNAQADAYE YMVEYSQTNK QAGRLENVVG WYHSHPGYGC WLSGIDVSTQ MLNQQYQEPF LAVVIDPTRT VSAGKVEIGA
201: FRTYPEGYKP PDDPISEYQT IPLNKIEDFG VHCKQYYSLD ITYFKSSLDC HLLDLLWNKY WVNTLSSSPL LGNGDYVAGQ ISDLAEKLEH AENQLSNSRY
301: ASLMAPPQRK KEEESQLAKI TRDSAKITVE QVHGLMSQVI KDILFNSVGK SSKSQTEPSG PEPMIES
001: MEGSSSAIAR KTWELENNIL PVEPTDSASD SIFHYDDASQ AKIQQEKPWA SDPNYFKRVH ISALALLKMV VHARSGGTIE IMGLMQGKTE GDTIIVMDAF
101: ALPVEGTETR VNAQSDAYEY MVEYSQTSKL AGRLENVVGW YHSHPGYGCW LSGIDVSTQM LNQQYQEPFL AVVIDPTRTV SAGKVEIGAF RTYPEGHKIS
201: DDHVSEYQTI PLNKIEDFGV HCKQYYSLDI TYFKSSLDSH LLDLLWNKYW VNTLSSSPLL GNGDYVAGQI SDLAEKLEQA ESQLANSRYG GIAPAGHQRR
301: KEDEPQLAKI TRDSAKITVE QVHGLMSQVI KDILFNSARQ SKKSADDSSD PEPMITS
101: ALPVEGTETR VNAQSDAYEY MVEYSQTSKL AGRLENVVGW YHSHPGYGCW LSGIDVSTQM LNQQYQEPFL AVVIDPTRTV SAGKVEIGAF RTYPEGHKIS
201: DDHVSEYQTI PLNKIEDFGV HCKQYYSLDI TYFKSSLDSH LLDLLWNKYW VNTLSSSPLL GNGDYVAGQI SDLAEKLEQA ESQLANSRYG GIAPAGHQRR
301: KEDEPQLAKI TRDSAKITVE QVHGLMSQVI KDILFNSARQ SKKSADDSSD PEPMITS
Arabidopsis Description
CSN5ACOP9 signalosome complex subunit 5a [Source:UniProtKB/Swiss-Prot;Acc:Q8LAZ7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.