Factsheet for PGSC0003DMT400048896

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006601
PGSC0003DMT400012398
PGSC0003DMT400023896
PGSC0003DMT400042166
PGSC0003DMT400055395
PGSC0003DMT400069203

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50300.1	PGSC0003DMT400006601	AT1G17440.1	17340043
AT1G50300.1	PGSC0003DMT400012398	AT1G17440.1	17340043
AT1G50300.1	PGSC0003DMT400055395	AT1G27720.1	17340043
AT1G50300.1	PGSC0003DMT400023896	AT1G71230.1	21798944
AT1G50300.1	PGSC0003DMT400069203	AT1G71230.1	21798944
AT1G50300.1	PGSC0003DMT400042166	AT5G08330.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g040050.1.1	Tomato	nucleus	96.38	95.89
KRH24217	Soybean	nucleus	71.58	72.51
AT1G50300.1	Thale cress	nucleus	68.22	70.97
KRH75898	Soybean	nucleus	35.14	70.83
KRH29220	Soybean	nucleus	70.54	70.73
Os09t0299500-01	Rice	nucleus	29.2	70.62
VIT_01s0010g01410.t01	Wine grape	nucleus	75.19	70.29
Bra014245.1-P	Field mustard	nucleus	68.99	70.26
CDY67548	Canola	nucleus	68.99	70.26
KRH62947	Soybean	nucleus	25.58	70.21
CDY03594	Canola	nucleus	68.73	70.18
CDY42510	Canola	nucleus	69.25	69.97
EER99320	Sorghum	nucleus	69.77	68.88
Bra018839.1-P	Field mustard	nucleus	66.93	68.7
Os07t0296200-01	Rice	nucleus	69.77	68.53
CDY22787	Canola	nucleus	66.67	68.44
Zm00001d021426_P002	Maize	nucleus	68.73	68.21
TraesCS5B01G176600.1	Wheat	nucleus	68.22	67.52
HORVU5Hr1G054500.18	Barley	nucleus	67.7	66.84
TraesCS5A01G178900.3	Wheat	nucleus	67.96	64.62
TraesCS5D01G183400.3	Wheat	nucleus	67.96	64.62
GSMUA_Achr8P27040_001	Banana	cytosol	15.5	58.25
GSMUA_Achr6P27180_001	Banana	nucleus	71.83	45.5
GSMUA_Achr8P27030_001	Banana	cytosol	16.54	42.95

Protein Annotations

EntrezGene:102585899	MapMan:15.3.5.3.15	Gene3D:3.30.70.330	Gene3D:4.10.1060.10	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0046872	InterPro:IPR000504	InterPro:IPR001876
InterPro:IPR012677	UniProt:M1BN02	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00641	EnsemblPlantsGene:PGSC0003DMG400018999
PGSC:PGSC0003DMG400018999	EnsemblPlants:PGSC0003DMT400048896	ScanProsite:PS01358	PFscan:PS50102	PFscan:PS50199	PANTHER:PTHR12999
PANTHER:PTHR12999:SF7	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SMART:SM00547	SUPFAM:SSF54928
SUPFAM:SSF90209	UniParc:UPI0002969FCF	RefSeq:XP_006343487.1	InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	SEG:seg

Description

RNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400018999]

Coordinates

chr11:-:18370326..18376778

Molecular Weight (calculated)

42785.1 Da

IEP (calculated)

8.129

GRAVY (calculated)

-1.129

Length

387 amino acids

Sequence
(BLAST)

001: MASYSGKGSP LNGSVYVCNL PLGTDEDMLA EYFGTIGVLK KDKRSGRPKI WLYRDKVTNE PKGDATVTYE DPHAALAAVE WFNNKDFHGS MIGVFIAESK
101: NKDEASYVSV NQISEPNLDS GLAVLDEVSN DIDGGGGSGR GRGDASAKAW QQDGDWLCPN TSCTNVNFAF RGVCNRCGTA RPAGAGGGGG GAAGRGRGRG
201: SQDPGAPGRA VGGPPGLFGP NDWACPMCAN INWAKRNKCN ICNTNKPGHN EGGVRGGRAG GYKELDEEEI EETRRRRREA EEDDGEMYDE FGNLKKKFRA
301: KTQRAEAAQS LPPGVGRAGW EAEELGVAER DRKERSRERS RDYDDRERAR HRSRSRERDR GRDRDRSYDY DRDREYGRDR ERNRYRH

Best Arabidopsis Sequence Match ( AT1G50300.1 )
(BLAST)

001: MAGYPTNGSV YVSNLPLGTD ENMLADYFGT IGLLKRDKRT GTPKVWLYRD KETDEPKGDA TVTYEDPHAA LAAVEWFNNK DFHGNTIGVF MAESKNKNAG
101: DAVEFVEFDG GAEETNGGAG RGRGQADSSA KPWQQDGDWM CPNTSCTNVN FAFRGVCNRC GTARPAGASG GSMGAGRGRG RGGGADGGAP GKQPSGAPTG
201: LFGPNDWACP MCGNVNWAKR LKCNICNTNK PGQNEGGVRG GRGGGYKELD EQELEETKRR RREAEEDDGE MYDEFGNLKK KYRVKTNQAD TRPAVAAGRA
301: GWEVEELGID KDGRERSRDR QRDRGRDHHY DKDRRRSRSR ERERGKERDY DYDHDRDRDR DYGRERGSRY RN

Arabidopsis Description

TAF15Transcription initiation factor TFIID subunit 15 [Source:UniProtKB/Swiss-Prot;Acc:Q9AST1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.