CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	extracellular, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	extracellular
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70737
CDX81826
CDX84994
CDX84995
CDX87453
CDY03849
CDY03944
CDY21749
CDY24397
CDY24398
CDY24399
CDY26245
CDY31621
CDY35849
CDY36104
CDY42101
CDY44770
CDY48302
CDY51132
CDY60273
CDY70440

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50300.1	CDX81826	AT1G17440.1	17340043
AT1G50300.1	CDY21749	AT1G17440.1	17340043
AT1G50300.1	CDY26245	AT1G17440.1	17340043
AT1G50300.1	CDY48302	AT1G17440.1	17340043
AT1G50300.1	CDX70737	AT1G25490.1	21798944
AT1G50300.1	CDX84994	AT1G25490.1	21798944
AT1G50300.1	CDX84995	AT1G25490.1	21798944
AT1G50300.1	CDX87453	AT1G25490.1	21798944
AT1G50300.1	CDY03849	AT1G25490.1	21798944
AT1G50300.1	CDY24397	AT1G25490.1	21798944
AT1G50300.1	CDY24398	AT1G25490.1	21798944
AT1G50300.1	CDY24399	AT1G25490.1	21798944
AT1G50300.1	CDY31621	AT1G25490.1	21798944
AT1G50300.1	CDY35849	AT1G25490.1	21798944
AT1G50300.1	CDY36104	AT1G25490.1	21798944
AT1G50300.1	CDY42101	AT1G25490.1	21798944
AT1G50300.1	CDY51132	AT1G25490.1	21798944
AT1G50300.1	CDY70440	AT1G25490.1	21798944
AT1G50300.1	CDY03944	AT1G27720.1	17340043
AT1G50300.1	CDY60273	AT1G27720.1	17340043
AT1G50300.1	CDY44770	AT5G08330.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22787	Canola	nucleus	92.17	93.63
CDY03594	Canola	nucleus	91.91	92.88
CDY67548	Canola	nucleus	91.91	92.63
AT1G50300.1	Thale cress	nucleus	85.64	88.17
PGSC0003DMT400048896	Potato	nucleus	69.97	69.25
Solyc11g040050.1.1	Tomato	nucleus	70.23	69.15
KRH62947	Soybean	nucleus	25.33	68.79
KRH75898	Soybean	nucleus	34.2	68.23
KRH29220	Soybean	nucleus	67.62	67.1
VIT_01s0010g01410.t01	Wine grape	nucleus	72.32	66.91
Os09t0299500-01	Rice	nucleus	27.94	66.88
KRH24217	Soybean	nucleus	66.58	66.75
Zm00001d021426_P002	Maize	nucleus	66.58	65.38
TraesCS5B01G176600.1	Wheat	nucleus	66.32	64.96
HORVU5Hr1G054500.18	Barley	nucleus	66.32	64.8
EER99320	Sorghum	nucleus	66.06	64.54
Os07t0296200-01	Rice	nucleus	66.06	64.21
TraesCS5A01G178900.3	Wheat	nucleus	66.58	62.65
TraesCS5D01G183400.3	Wheat	nucleus	66.06	62.16
GSMUA_Achr8P27040_001	Banana	cytosol	14.36	53.4
GSMUA_Achr8P27030_001	Banana	cytosol	16.45	42.28
GSMUA_Achr6P27180_001	Banana	nucleus	66.58	41.73

Protein Annotations

MapMan:15.3.5.3.15	Gene3D:3.30.70.330	Gene3D:4.10.1060.10	GO:A0A078HVJ9	UniProt:A0A078HVJ9	EnsemblPlants:CDY42510
ProteinID:CDY42510	ProteinID:CDY42510.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00074961001	InterPro:IPR000504	InterPro:IPR001876	InterPro:IPR012677
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00641	ScanProsite:PS01358	PFscan:PS50102	PFscan:PS50199
PANTHER:PTHR12999	PANTHER:PTHR12999:SF7	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SMART:SM00547
SUPFAM:SSF54928	SUPFAM:SSF90209	UniParc:UPI0004EE4BA8	InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	SEG:seg

Description

BnaC06g03480DBnaC06g03480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HVJ9]

Coordinates

chrLK032527:+:88485..92090

Molecular Weight (calculated)

42032.1 Da

IEP (calculated)

8.826

GRAVY (calculated)

-1.225

Length

383 amino acids

Sequence
(BLAST)

001: MSGYSTKGAA PTNGSVYVSN LPLGTDENML AEYFGTIGLL KRDKRTGTPK VWLYRDKETD EPKGDATVTY EDPHAALAAV EWFNNKDFHG SVIGVFMAES
101: KNKGGGDYPS ESLGFDGGAA SKEIDGGAGR GRGQGDSSAK PWQQDGDWMC PNTSCTNVNF AFRGVCNRCG TARPAGASGG GIGGGGRGRG RGGGADAGPP
201: GKGASTGLFG PNDWSCPMCG NVNWAKRLKC NVCNTNKPGQ NEGGVRGGRG GGYKELDEQE LEETKRRRRE AEEDDGEMYD EFGNLKKKYR VKTNQADTRP
301: AVAAGRAGWQ VEELGVDRDG RERSRDRQRD RGDKHIDHHY AKDRRRSRSR ERERGGKERD YDYDHDRNRD RDRDYSRGSR YRN

Best Arabidopsis Sequence Match ( AT1G50300.1 )
(BLAST)

001: MAGYPTNGSV YVSNLPLGTD ENMLADYFGT IGLLKRDKRT GTPKVWLYRD KETDEPKGDA TVTYEDPHAA LAAVEWFNNK DFHGNTIGVF MAESKNKNAG
101: DAVEFVEFDG GAEETNGGAG RGRGQADSSA KPWQQDGDWM CPNTSCTNVN FAFRGVCNRC GTARPAGASG GSMGAGRGRG RGGGADGGAP GKQPSGAPTG
201: LFGPNDWACP MCGNVNWAKR LKCNICNTNK PGQNEGGVRG GRGGGYKELD EQELEETKRR RREAEEDDGE MYDEFGNLKK KYRVKTNQAD TRPAVAAGRA
301: GWEVEELGID KDGRERSRDR QRDRGRDHHY DKDRRRSRSR ERERGKERDY DYDHDRDRDR DYGRERGSRY RN

Arabidopsis Description

TAF15Transcription initiation factor TFIID subunit 15 [Source:UniProtKB/Swiss-Prot;Acc:Q9AST1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.