Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G176600.1 | Wheat | nucleus | 97.96 | 98.21 |
| TraesCS5A01G178900.3 | Wheat | nucleus | 97.45 | 93.86 |
| TraesCS5D01G183400.3 | Wheat | nucleus | 97.19 | 93.61 |
| Os09t0299500-01 | Rice | nucleus | 33.93 | 83.12 |
| Zm00001d021426_P002 | Maize | nucleus | 78.57 | 78.97 |
| Os07t0296200-01 | Rice | nucleus | 79.08 | 78.68 |
| EER99320 | Sorghum | nucleus | 76.53 | 76.53 |
| CDY67548 | Canola | nucleus | 65.82 | 67.89 |
| CDY03594 | Canola | nucleus | 65.56 | 67.81 |
| PGSC0003DMT400048896 | Potato | nucleus | 66.84 | 67.7 |
| Bra014245.1-P | Field mustard | nucleus | 65.31 | 67.37 |
| AT1G50300.1 | Thale cress | nucleus | 63.78 | 67.2 |
| Solyc11g040050.1.1 | Tomato | nucleus | 66.33 | 66.84 |
| CDY42510 | Canola | nucleus | 64.8 | 66.32 |
| KRH62947 | Soybean | nucleus | 23.72 | 65.96 |
| KRH75898 | Soybean | nucleus | 32.14 | 65.62 |
| Bra018839.1-P | Field mustard | nucleus | 63.01 | 65.52 |
| CDY22787 | Canola | nucleus | 62.76 | 65.25 |
| VIT_01s0010g01410.t01 | Wine grape | nucleus | 68.88 | 65.22 |
| KRH24217 | Soybean | nucleus | 62.5 | 64.14 |
| KRH29220 | Soybean | nucleus | 63.01 | 63.99 |
| GSMUA_Achr8P27040_001 | Banana | cytosol | 15.31 | 58.25 |
| GSMUA_Achr6P27180_001 | Banana | nucleus | 69.9 | 44.84 |
| GSMUA_Achr8P27030_001 | Banana | cytosol | 16.84 | 44.3 |
Protein Annotations
| MapMan:15.3.5.3.15 | Gene3D:3.30.70.330 | Gene3D:4.10.1060.10 | UniProt:A0A287R9K6 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0046872 | EnsemblPlantsGene:HORVU5Hr1G054500 | EnsemblPlants:HORVU5Hr1G054500.18 |
| InterPro:IPR000504 | InterPro:IPR001876 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF00641 |
| ScanProsite:PS01358 | PFscan:PS50102 | PFscan:PS50199 | PANTHER:PTHR12999 | PANTHER:PTHR12999:SF7 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SMART:SM00547 | SUPFAM:SSF54928 | SUPFAM:SSF90209 | UniParc:UPI000B460E84 |
| InterPro:Znf_RanBP2 | InterPro:Znf_RanBP2_sf | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrchr5H:+:428281541..428284320
Molecular Weight (calculated)
43705.1 Da
IEP (calculated)
8.930
GRAVY (calculated)
-1.297
Length
392 amino acids
Sequence
(BLAST)
(BLAST)
001: LWMAGYMSRG PPNGSIYVCN LPPGTDETML AEYFGTIGLL KKDKRTGHPK IWIYRDKVTN EPKGDATVTY EDPHAASAAV EWFNNKDFHG SIIQVHIAES
101: KNKDTVDNFT NVSVDAEIVG QDELDNGSGR GRGRGDGPAK AWQQDGDWMC PNTSCGNVNF AFRGVCNRCG ASRPAGVSGS GGGGGRGRGR GSDDARGSRA
201: AAAVGGPPGL FGPNDWPCTM CGNVNWAKRT KCNVCNTSRP GHNEGGVRGG RGGGFKELDE EELEEVRRRR KEAEEDDGEM YDEFGNLKKK FRAKSHQTES
301: TPTLPGSGRA GWEVEHRSTE REGRERSRDR GRDDYDERES KNRDRGSHGR ERRRSRSRSR DREKERGRDR GRDRGNERSW ERGTDRERDR YR
101: KNKDTVDNFT NVSVDAEIVG QDELDNGSGR GRGRGDGPAK AWQQDGDWMC PNTSCGNVNF AFRGVCNRCG ASRPAGVSGS GGGGGRGRGR GSDDARGSRA
201: AAAVGGPPGL FGPNDWPCTM CGNVNWAKRT KCNVCNTSRP GHNEGGVRGG RGGGFKELDE EELEEVRRRR KEAEEDDGEM YDEFGNLKKK FRAKSHQTES
301: TPTLPGSGRA GWEVEHRSTE REGRERSRDR GRDDYDERES KNRDRGSHGR ERRRSRSRSR DREKERGRDR GRDRGNERSW ERGTDRERDR YR
001: MAGYPTNGSV YVSNLPLGTD ENMLADYFGT IGLLKRDKRT GTPKVWLYRD KETDEPKGDA TVTYEDPHAA LAAVEWFNNK DFHGNTIGVF MAESKNKNAG
101: DAVEFVEFDG GAEETNGGAG RGRGQADSSA KPWQQDGDWM CPNTSCTNVN FAFRGVCNRC GTARPAGASG GSMGAGRGRG RGGGADGGAP GKQPSGAPTG
201: LFGPNDWACP MCGNVNWAKR LKCNICNTNK PGQNEGGVRG GRGGGYKELD EQELEETKRR RREAEEDDGE MYDEFGNLKK KYRVKTNQAD TRPAVAAGRA
301: GWEVEELGID KDGRERSRDR QRDRGRDHHY DKDRRRSRSR ERERGKERDY DYDHDRDRDR DYGRERGSRY RN
101: DAVEFVEFDG GAEETNGGAG RGRGQADSSA KPWQQDGDWM CPNTSCTNVN FAFRGVCNRC GTARPAGASG GSMGAGRGRG RGGGADGGAP GKQPSGAPTG
201: LFGPNDWACP MCGNVNWAKR LKCNICNTNK PGQNEGGVRG GRGGGYKELD EQELEETKRR RREAEEDDGE MYDEFGNLKK KYRVKTNQAD TRPAVAAGRA
301: GWEVEELGID KDGRERSRDR QRDRGRDHHY DKDRRRSRSR ERERGKERDY DYDHDRDRDR DYGRERGSRY RN
Arabidopsis Description
TAF15Transcription initiation factor TFIID subunit 15 [Source:UniProtKB/Swiss-Prot;Acc:Q9AST1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.