Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018839.1-P | Field mustard | nucleus | 87.37 | 86.21 |
| CDY22787 | Canola | nucleus | 87.37 | 86.21 |
| CDY67548 | Canola | nucleus | 87.63 | 85.79 |
| CDY42510 | Canola | nucleus | 88.17 | 85.64 |
| Bra014245.1-P | Field mustard | nucleus | 87.37 | 85.53 |
| CDY03594 | Canola | nucleus | 86.56 | 84.96 |
| PGSC0003DMT400048896 | Potato | nucleus | 70.97 | 68.22 |
| KRH29220 | Soybean | nucleus | 70.7 | 68.13 |
| KRH62947 | Soybean | nucleus | 25.81 | 68.09 |
| KRH24217 | Soybean | nucleus | 69.89 | 68.06 |
| KRH75898 | Soybean | nucleus | 34.68 | 67.19 |
| Solyc11g040050.1.1 | Tomato | nucleus | 70.16 | 67.1 |
| Os09t0299500-01 | Rice | nucleus | 28.49 | 66.25 |
| VIT_01s0010g01410.t01 | Wine grape | nucleus | 72.58 | 65.22 |
| Zm00001d021426_P002 | Maize | nucleus | 68.01 | 64.87 |
| TraesCS5B01G176600.1 | Wheat | nucleus | 67.47 | 64.19 |
| HORVU5Hr1G054500.18 | Barley | nucleus | 67.2 | 63.78 |
| EER99320 | Sorghum | nucleus | 66.94 | 63.52 |
| Os07t0296200-01 | Rice | nucleus | 66.94 | 63.2 |
| TraesCS5A01G178900.3 | Wheat | nucleus | 67.74 | 61.92 |
| TraesCS5D01G183400.3 | Wheat | nucleus | 66.94 | 61.18 |
| GSMUA_Achr8P27040_001 | Banana | cytosol | 14.52 | 52.43 |
| GSMUA_Achr8P27030_001 | Banana | cytosol | 16.94 | 42.28 |
| GSMUA_Achr6P27180_001 | Banana | nucleus | 68.01 | 41.41 |
Protein Annotations
| MapMan:15.3.5.3.15 | Gene3D:3.30.70.330 | Gene3D:4.10.1060.10 | EntrezGene:841452 | ProteinID:AAD50053.1 | ProteinID:AEE32534.1 |
| EMBL:AF367295 | ArrayExpress:AT1G50300 | EnsemblPlantsGene:AT1G50300 | RefSeq:AT1G50300 | TAIR:AT1G50300 | RefSeq:AT1G50300-TAIR-G |
| EnsemblPlants:AT1G50300.1 | TAIR:AT1G50300.1 | EMBL:AY091686 | EMBL:AY463618 | Unigene:At.28724 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046872 | InterPro:IPR000504 | InterPro:IPR001876 |
| InterPro:IPR012677 | RefSeq:NP_564565.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF00641 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007098 | PO:PO:0007115 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | ScanProsite:PS01358 | PFscan:PS50102 | PFscan:PS50199 | PANTHER:PTHR12999 | PANTHER:PTHR12999:SF7 |
| UniProt:Q9AST1 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SMART:SM00547 | SUPFAM:SSF54928 |
| SUPFAM:SSF90209 | Symbol:TAF15 | UniParc:UPI00000A7B49 | InterPro:Znf_RanBP2 | InterPro:Znf_RanBP2_sf | SEG:seg |
Description
TAF15Transcription initiation factor TFIID subunit 15 [Source:UniProtKB/Swiss-Prot;Acc:Q9AST1]
Coordinates
chr1:-:18628555..18632039
Molecular Weight (calculated)
41278.2 Da
IEP (calculated)
7.977
GRAVY (calculated)
-1.266
Length
372 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGYPTNGSV YVSNLPLGTD ENMLADYFGT IGLLKRDKRT GTPKVWLYRD KETDEPKGDA TVTYEDPHAA LAAVEWFNNK DFHGNTIGVF MAESKNKNAG
101: DAVEFVEFDG GAEETNGGAG RGRGQADSSA KPWQQDGDWM CPNTSCTNVN FAFRGVCNRC GTARPAGASG GSMGAGRGRG RGGGADGGAP GKQPSGAPTG
201: LFGPNDWACP MCGNVNWAKR LKCNICNTNK PGQNEGGVRG GRGGGYKELD EQELEETKRR RREAEEDDGE MYDEFGNLKK KYRVKTNQAD TRPAVAAGRA
301: GWEVEELGID KDGRERSRDR QRDRGRDHHY DKDRRRSRSR ERERGKERDY DYDHDRDRDR DYGRERGSRY RN
101: DAVEFVEFDG GAEETNGGAG RGRGQADSSA KPWQQDGDWM CPNTSCTNVN FAFRGVCNRC GTARPAGASG GSMGAGRGRG RGGGADGGAP GKQPSGAPTG
201: LFGPNDWACP MCGNVNWAKR LKCNICNTNK PGQNEGGVRG GRGGGYKELD EQELEETKRR RREAEEDDGE MYDEFGNLKK KYRVKTNQAD TRPAVAAGRA
301: GWEVEELGID KDGRERSRDR QRDRGRDHHY DKDRRRSRSR ERERGKERDY DYDHDRDRDR DYGRERGSRY RN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.