Factsheet for GSMUA_Achr8P27040_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr4P14200_001
GSMUA_Achr7P10670_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50300.1	GSMUA_Achr7P10670_001	AT1G17440.1	17340043
AT1G50300.1	GSMUA_Achr4P14200_001	AT1G27720.1	17340043
AT1G50300.1	GSMUA_Achr10P...	AT1G71230.1	21798944
AT1G50300.1	GSMUA_Achr11P...	AT5G08330.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os09t0299500-01	Rice	nucleus	52.43	33.75
KRH62947	Soybean	nucleus	25.24	18.44
Os07t0296200-01	Rice	nucleus	61.16	15.99
KRH24217	Soybean	nucleus	58.25	15.71
PGSC0003DMT400048896	Potato	nucleus	58.25	15.5
Solyc11g040050.1.1	Tomato	nucleus	58.25	15.42
Zm00001d021426_P002	Maize	nucleus	58.25	15.38
TraesCS5B01G176600.1	Wheat	nucleus	58.25	15.35
EER99320	Sorghum	nucleus	58.25	15.31
HORVU5Hr1G054500.18	Barley	nucleus	58.25	15.31
CDY22787	Canola	nucleus	55.34	15.12
Bra018839.1-P	Field mustard	nucleus	54.37	14.85
KRH29220	Soybean	nucleus	55.34	14.77
TraesCS5A01G178900.3	Wheat	nucleus	58.25	14.74
TraesCS5D01G183400.3	Wheat	nucleus	58.25	14.74
AT1G50300.1	Thale cress	nucleus	52.43	14.52
CDY03594	Canola	nucleus	53.4	14.51
CDY67548	Canola	nucleus	53.4	14.47
CDY42510	Canola	nucleus	53.4	14.36
Bra014245.1-P	Field mustard	nucleus	52.43	14.21
KRH75898	Soybean	nucleus	26.21	14.06
VIT_01s0010g01410.t01	Wine grape	nucleus	56.31	14.01
GSMUA_Achr6P27180_001	Banana	nucleus	69.9	11.78
GSMUA_Achr8P27030_001	Banana	cytosol	2.91	2.01

Protein Annotations

EnsemblPlants:GSMUA_Achr8P27040_001	EnsemblPlants:GSMUA_Achr8T27040_001	EnsemblPlantsGene:GSMUA_Achr8G27040_001	Gene3D:4.10.1060.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:TET_fam	InterPro:Znf_RanBP2_sf	PANTHER:PTHR23238	SEG:seg
SUPFAM:SSF90209	UniParc:UPI000294E5F3	UniProt:M0TU07	MapMan:15.3.5.3.15	:	:

Description

Putative RNA-binding protein EWS [Source:GMGC_GENE;Acc:GSMUA_Achr8G27040_001]

Coordinates

chr8:-:30345756..30346254

Molecular Weight (calculated)

11520.1 Da

IEP (calculated)

5.060

GRAVY (calculated)

-0.849

Length

103 amino acids

Sequence
(BLAST)

001: MGDATITYKD PHAVVEWFYN KDFHGTPIEV HIAESKTKDL NDHSYAQQNG FEANSSMVPG VYDDVDRGGG RGRGRGDASG WSWQKDGDWM CPNTRCSNVN
101: FAF

Best Arabidopsis Sequence Match ( AT1G50300.1 )
(BLAST)

001: MAGYPTNGSV YVSNLPLGTD ENMLADYFGT IGLLKRDKRT GTPKVWLYRD KETDEPKGDA TVTYEDPHAA LAAVEWFNNK DFHGNTIGVF MAESKNKNAG
101: DAVEFVEFDG GAEETNGGAG RGRGQADSSA KPWQQDGDWM CPNTSCTNVN FAFRGVCNRC GTARPAGASG GSMGAGRGRG RGGGADGGAP GKQPSGAPTG
201: LFGPNDWACP MCGNVNWAKR LKCNICNTNK PGQNEGGVRG GRGGGYKELD EQELEETKRR RREAEEDDGE MYDEFGNLKK KYRVKTNQAD TRPAVAAGRA
301: GWEVEELGID KDGRERSRDR QRDRGRDHHY DKDRRRSRSR ERERGKERDY DYDHDRDRDR DYGRERGSRY RN

Arabidopsis Description

TAF15Transcription initiation factor TFIID subunit 15 [Source:UniProtKB/Swiss-Prot;Acc:Q9AST1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.