CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90619
KRH05606
KRH06174
KRH15434
KRH36141
KRH47589
KRH52077
KRH52586
KRH61389
KRH61926

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50300.1	KRH06174	AT1G17440.1	17340043
AT1G50300.1	KRH47589	AT1G17440.1	17340043
AT1G50300.1	KRH05606	AT1G27720.1	17340043
AT1G50300.1	KRH15434	AT1G27720.1	17340043
AT1G50300.1	KRH52077	AT1G27720.1	17340043
AT1G50300.1	KRH61389	AT1G27720.1	17340043
AT1G50300.1	KRH52586	AT1G71230.1	21798944
AT1G50300.1	KRH61926	AT1G71230.1	21798944
AT1G50300.1	KRG90619	AT5G08330.1	21798944
AT1G50300.1	KRH36141	AT5G08330.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29220	Soybean	nucleus	87.96	87.05
KRH62947	Soybean	nucleus	31.68	85.82
KRH75898	Soybean	nucleus	42.15	83.85
PGSC0003DMT400048896	Potato	nucleus	72.51	71.58
AT1G50300.1	Thale cress	nucleus	68.06	69.89
Solyc11g040050.1.1	Tomato	nucleus	70.94	69.67
VIT_01s0010g01410.t01	Wine grape	nucleus	75.13	69.32
Os09t0299500-01	Rice	nucleus	28.53	68.12
CDY67548	Canola	nucleus	67.02	67.37
Bra018839.1-P	Field mustard	nucleus	66.23	67.11
Bra014245.1-P	Field mustard	nucleus	66.75	67.11
CDY03594	Canola	nucleus	66.49	67.02
CDY22787	Canola	nucleus	65.97	66.84
CDY42510	Canola	nucleus	66.75	66.58
Os07t0296200-01	Rice	nucleus	66.49	64.47
Zm00001d021426_P002	Maize	nucleus	65.44	64.1
EER99320	Sorghum	nucleus	64.92	63.27
TraesCS5B01G176600.1	Wheat	nucleus	64.4	62.92
HORVU5Hr1G054500.18	Barley	nucleus	64.14	62.5
TraesCS5A01G178900.3	Wheat	nucleus	64.4	60.44
TraesCS5D01G183400.3	Wheat	nucleus	64.4	60.44
GSMUA_Achr8P27040_001	Banana	cytosol	15.71	58.25
GSMUA_Achr8P27030_001	Banana	cytosol	17.54	44.97
GSMUA_Achr6P27180_001	Banana	nucleus	69.37	43.37

Protein Annotations

EntrezGene:100780819	MapMan:15.3.5.3.15	Gene3D:3.30.70.330	Gene3D:4.10.1060.10	EMBL:ACUP02007172	ncoils:Coil
EnsemblPlantsGene:GLYMA_12G028800	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0046872
InterPro:IPR000504	InterPro:IPR001876	InterPro:IPR012677	UniProt:K7LSR9	EnsemblPlants:KRH24217	ProteinID:KRH24217
ProteinID:KRH24217.1	ProteinID:KRH24218.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00641	ScanProsite:PS01358
PFscan:PS50102	PFscan:PS50199	PANTHER:PTHR12999	PANTHER:PTHR12999:SF7	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SMART:SM00547	SUPFAM:SSF54928	SUPFAM:SSF90209	UniParc:UPI000233C173	InterPro:Znf_RanBP2
InterPro:Znf_RanBP2_sf	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:2148313..2153234

Molecular Weight (calculated)

42276.2 Da

IEP (calculated)

7.690

GRAVY (calculated)

-1.223

Length

382 amino acids

Sequence
(BLAST)

001: MASHPGNHAP SNGSVYVCNL PYGTDDNMLA EYFGTIGLIK KDKRTGRPKI WLYRDKETNE PKGDATVTYE DPHAAVAAVE WFNNKDFHGN TIGVFIAESK
101: NKDDQAYNAA VEPGVTDNVG GLEETTKDVN GGSGRGRGQN DTSGKAWQQD GDWLCLNTSC SNVNFAFRGA CNRCGTARPA GASGISGAGG RGKGRAAQES
201: GGIGRPAGGG LFGPNDWPCP MCGNINWAKR TKCNICNTNK PGHNEGGVRG GRGGGYKELD EEEIEETRRR RREAEDDGEL YDEFGNLKKK FRAKTQQAEA
301: ARGLPGSGRA GWEVEELGID RDARESRDRG RERNDGESRN RERSEKERPS SWNRERGRDR DWDYVDRDRD YGRDRDRSRH RY

Best Arabidopsis Sequence Match ( AT1G50300.1 )
(BLAST)

001: MAGYPTNGSV YVSNLPLGTD ENMLADYFGT IGLLKRDKRT GTPKVWLYRD KETDEPKGDA TVTYEDPHAA LAAVEWFNNK DFHGNTIGVF MAESKNKNAG
101: DAVEFVEFDG GAEETNGGAG RGRGQADSSA KPWQQDGDWM CPNTSCTNVN FAFRGVCNRC GTARPAGASG GSMGAGRGRG RGGGADGGAP GKQPSGAPTG
201: LFGPNDWACP MCGNVNWAKR LKCNICNTNK PGQNEGGVRG GRGGGYKELD EQELEETKRR RREAEEDDGE MYDEFGNLKK KYRVKTNQAD TRPAVAAGRA
301: GWEVEELGID KDGRERSRDR QRDRGRDHHY DKDRRRSRSR ERERGKERDY DYDHDRDRDR DYGRERGSRY RN

Arabidopsis Description

TAF15Transcription initiation factor TFIID subunit 15 [Source:UniProtKB/Swiss-Prot;Acc:Q9AST1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.