Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | |
| GSMUA_Achr11P... | |
| GSMUA_Achr4P14200_001 | |
| GSMUA_Achr7P10670_001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH62947 | Soybean | nucleus | 16.86 | 73.05 |
| Solyc11g040050.1.1 | Tomato | nucleus | 46.15 | 72.49 |
| PGSC0003DMT400048896 | Potato | nucleus | 45.5 | 71.83 |
| KRH75898 | Soybean | nucleus | 22.26 | 70.83 |
| Zm00001d021426_P002 | Maize | nucleus | 45.17 | 70.77 |
| GSMUA_Achr8P27040_001 | Banana | cytosol | 11.78 | 69.9 |
| HORVU5Hr1G054500.18 | Barley | nucleus | 44.84 | 69.9 |
| TraesCS5B01G176600.1 | Wheat | nucleus | 44.68 | 69.82 |
| VIT_01s0010g01410.t01 | Wine grape | nucleus | 47.3 | 69.81 |
| KRH24217 | Soybean | nucleus | 43.37 | 69.37 |
| Os07t0296200-01 | Rice | nucleus | 44.52 | 69.04 |
| EER99320 | Sorghum | nucleus | 44.19 | 68.88 |
| KRH29220 | Soybean | nucleus | 43.21 | 68.39 |
| AT1G50300.1 | Thale cress | nucleus | 41.41 | 68.01 |
| Bra018839.1-P | Field mustard | nucleus | 41.9 | 67.9 |
| CDY03594 | Canola | nucleus | 42.06 | 67.81 |
| Os09t0299500-01 | Rice | nucleus | 17.68 | 67.5 |
| CDY22787 | Canola | nucleus | 41.57 | 67.37 |
| CDY67548 | Canola | nucleus | 41.9 | 67.37 |
| Bra014245.1-P | Field mustard | nucleus | 41.9 | 67.37 |
| TraesCS5D01G183400.3 | Wheat | nucleus | 44.68 | 67.08 |
| TraesCS5A01G178900.3 | Wheat | nucleus | 44.52 | 66.83 |
| CDY42510 | Canola | nucleus | 41.73 | 66.58 |
| GSMUA_Achr8P27030_001 | Banana | cytosol | 12.6 | 51.68 |
Protein Annotations
| MapMan:15.3.5.3.15 | Gene3D:3.30.70.330 | Gene3D:4.10.1060.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0046872 | EnsemblPlantsGene:GSMUA_Achr6G27180_001 | EnsemblPlants:GSMUA_Achr6P27180_001 | EnsemblPlants:GSMUA_Achr6T27180_001 |
| InterPro:IPR000504 | InterPro:IPR001876 | InterPro:IPR012677 | UniProt:M0TAL3 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFAM:PF00641 | ScanProsite:PS01358 | PFscan:PS50102 | PFscan:PS50199 | PANTHER:PTHR12999 | PANTHER:PTHR12999:SF7 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SMART:SM00547 | SUPFAM:SSF54928 | SUPFAM:SSF90209 |
| UniParc:UPI00029522AF | InterPro:Znf_RanBP2 | InterPro:Znf_RanBP2_sf | SEG:seg | : | : |
Description
zinc finger Ran-binding domain-containing protein 2, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G27180_001]
Coordinates
chr6:+:27764281..27771670
Molecular Weight (calculated)
67792.4 Da
IEP (calculated)
10.199
GRAVY (calculated)
-1.203
Length
611 amino acids
Sequence
(BLAST)
(BLAST)
001: MASYSGRGGP SNGSVYVCKL PPGTDETMLA EYFGTIGLLK KDKRTGRPKI WLYRDKTTNE PKGDATVTYE DPHAALAAVE WFHNKDFHGV PIEVYIAESK
101: TKDSIDNSTQ QDGFEENPIM EVGGHDDLNG AGGRGRGRAG ASGKSWQQDG DWMCPNTSCS NVNFAFRGVC NRCGTARPAG VGGTGAGGGG RGRGRGSGDA
201: GGVARSVGGP TGLFGPNDWP CPMCGNINWA KRTKCNICNT NKPGHNEGGV RGGRAGGYKE LDEEEIEETR RRRREAEEDD GEIYDEFGNL KKKFRAKTQQ
301: AEAGQMVPGS GRAGWEVEEI GVSERHGGEK SKDRYRDFNE RESSKNRERD GSERERERRR SRSRERERER EKERGRVSDR DYGYERGRER GRDRHRDWYA
401: AEQIKKGGEA MAMRSSRWNL VCFAMKASTA RRNSSASSAC TSSSDASVVV GGNMSLFRPA TTVSARRSSG GGPRRRSILC ERLFRNARVS THTALSSYTT
501: TSSCGGGREK ENRRPRLSRN SSKRSPTAAE EDEEEEEAEE VVVAEEEEGE GDRWPDLAKR RRTMALPRRK TKRGLRRTAA SRRRKSTERR AAAGRRADNQ
601: EKRRRPATAS R
101: TKDSIDNSTQ QDGFEENPIM EVGGHDDLNG AGGRGRGRAG ASGKSWQQDG DWMCPNTSCS NVNFAFRGVC NRCGTARPAG VGGTGAGGGG RGRGRGSGDA
201: GGVARSVGGP TGLFGPNDWP CPMCGNINWA KRTKCNICNT NKPGHNEGGV RGGRAGGYKE LDEEEIEETR RRRREAEEDD GEIYDEFGNL KKKFRAKTQQ
301: AEAGQMVPGS GRAGWEVEEI GVSERHGGEK SKDRYRDFNE RESSKNRERD GSERERERRR SRSRERERER EKERGRVSDR DYGYERGRER GRDRHRDWYA
401: AEQIKKGGEA MAMRSSRWNL VCFAMKASTA RRNSSASSAC TSSSDASVVV GGNMSLFRPA TTVSARRSSG GGPRRRSILC ERLFRNARVS THTALSSYTT
501: TSSCGGGREK ENRRPRLSRN SSKRSPTAAE EDEEEEEAEE VVVAEEEEGE GDRWPDLAKR RRTMALPRRK TKRGLRRTAA SRRRKSTERR AAAGRRADNQ
601: EKRRRPATAS R
001: MAGYPTNGSV YVSNLPLGTD ENMLADYFGT IGLLKRDKRT GTPKVWLYRD KETDEPKGDA TVTYEDPHAA LAAVEWFNNK DFHGNTIGVF MAESKNKNAG
101: DAVEFVEFDG GAEETNGGAG RGRGQADSSA KPWQQDGDWM CPNTSCTNVN FAFRGVCNRC GTARPAGASG GSMGAGRGRG RGGGADGGAP GKQPSGAPTG
201: LFGPNDWACP MCGNVNWAKR LKCNICNTNK PGQNEGGVRG GRGGGYKELD EQELEETKRR RREAEEDDGE MYDEFGNLKK KYRVKTNQAD TRPAVAAGRA
301: GWEVEELGID KDGRERSRDR QRDRGRDHHY DKDRRRSRSR ERERGKERDY DYDHDRDRDR DYGRERGSRY RN
101: DAVEFVEFDG GAEETNGGAG RGRGQADSSA KPWQQDGDWM CPNTSCTNVN FAFRGVCNRC GTARPAGASG GSMGAGRGRG RGGGADGGAP GKQPSGAPTG
201: LFGPNDWACP MCGNVNWAKR LKCNICNTNK PGQNEGGVRG GRGGGYKELD EQELEETKRR RREAEEDDGE MYDEFGNLKK KYRVKTNQAD TRPAVAAGRA
301: GWEVEELGID KDGRERSRDR QRDRGRDHHY DKDRRRSRSR ERERGKERDY DYDHDRDRDR DYGRERGSRY RN
Arabidopsis Description
TAF15Transcription initiation factor TFIID subunit 15 [Source:UniProtKB/Swiss-Prot;Acc:Q9AST1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.