Factsheet for VIT_01s0010g01410.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g04360.t01
VIT_09s0002g01420.t01
VIT_18s0001g09310.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50300.1	VIT_09s0002g01420.t01	AT1G17440.1	17340043
AT1G50300.1	VIT_18s0001g09310.t01	AT1G27720.1	17340043
AT1G50300.1	VIT_03s0038g04360.t01	AT1G71230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29220	Soybean	nucleus	71.74	76.94
Solyc11g040050.1.1	Tomato	nucleus	71.01	75.58
PGSC0003DMT400048896	Potato	nucleus	70.29	75.19
KRH62947	Soybean	nucleus	25.6	75.18
KRH24217	Soybean	nucleus	69.32	75.13
KRH75898	Soybean	nucleus	34.54	74.48
AT1G50300.1	Thale cress	nucleus	65.22	72.58
CDY42510	Canola	nucleus	66.91	72.32
Bra014245.1-P	Field mustard	nucleus	66.18	72.11
CDY67548	Canola	nucleus	66.18	72.11
CDY03594	Canola	nucleus	65.94	72.03
CDY22787	Canola	nucleus	64.98	71.35
Bra018839.1-P	Field mustard	nucleus	64.98	71.35
Os09t0299500-01	Rice	nucleus	27.29	70.62
Zm00001d021426_P002	Maize	nucleus	66.43	70.51
Os07t0296200-01	Rice	nucleus	66.91	70.3
EER99320	Sorghum	nucleus	65.7	69.39
TraesCS5B01G176600.1	Wheat	nucleus	65.46	69.31
HORVU5Hr1G054500.18	Barley	nucleus	65.22	68.88
TraesCS5D01G183400.3	Wheat	nucleus	65.7	66.83
TraesCS5A01G178900.3	Wheat	nucleus	65.46	66.58
GSMUA_Achr8P27040_001	Banana	cytosol	14.01	56.31
GSMUA_Achr8P27030_001	Banana	cytosol	17.87	49.66
GSMUA_Achr6P27180_001	Banana	nucleus	69.81	47.3

Protein Annotations

EntrezGene:100249627	wikigene:100249627	MapMan:15.3.5.3.15	Gene3D:3.30.70.330	Gene3D:4.10.1060.10	ProteinID:CBI27458
ProteinID:CBI27458.3	ncoils:Coil	UniProt:D7TAD5	EMBL:FN595754	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0046872	InterPro:IPR000504	InterPro:IPR001876	InterPro:IPR012677
EntrezGene:LOC100249627	wikigene:LOC100249627	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00641	ScanProsite:PS01358
PFscan:PS50102	PFscan:PS50199	PANTHER:PTHR12999	PANTHER:PTHR12999:SF7	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SMART:SM00547	SUPFAM:SSF54928	SUPFAM:SSF90209	UniParc:UPI00019829CF	ArrayExpress:VIT_01s0010g01410
EnsemblPlantsGene:VIT_01s0010g01410	EnsemblPlants:VIT_01s0010g01410.t01	unigene:Vvi.22422	RefSeq:XP_002273586	RefSeq:XP_002273586.1	RefSeq:XP_010654496.1
InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:-:17391373..17400950

Molecular Weight (calculated)

46291.7 Da

IEP (calculated)

7.944

GRAVY (calculated)

-1.390

Length

414 amino acids

Sequence
(BLAST)

001: MANYSGTGAP SNGSVYVCNL PHGTDETMLA EYFGTIGLIK KDKRTGRPKI WLYRDKVTNE PKGDATVTYE DPHAALAAVE WFNNKDFHGS IIGVFIAESK
101: NKDDHSYNSG NQVNDVGDPG AASDLRGLEE DPLDMNGSAG RGRGRGDAAG KAWQQDGDWL CPNTSCSNVN FAFRGVCNRC GSARPSGVSG SGAGAGGRGR
201: GRGGPDSAGH GRSVGAPTGL FGPNDWPCPM CGNINWAKRT KCNICNTNKP GHNEGGVRGG RGGGYKELDE EELEETKRRR REAEEDDGEL YDEFGNLKKK
301: FRAKTQQAEA GQVLPGAGRA GWEVEELGMA DRDGRERSKD RGRERDDREK NRERDDRDRR RSRSRERDRG KDRDRDRDYD HDRDRDYGRD RDRDRDRDRD
401: RDRDRDRDRS RYRY

Best Arabidopsis Sequence Match ( AT1G50300.1 )
(BLAST)

001: MAGYPTNGSV YVSNLPLGTD ENMLADYFGT IGLLKRDKRT GTPKVWLYRD KETDEPKGDA TVTYEDPHAA LAAVEWFNNK DFHGNTIGVF MAESKNKNAG
101: DAVEFVEFDG GAEETNGGAG RGRGQADSSA KPWQQDGDWM CPNTSCTNVN FAFRGVCNRC GTARPAGASG GSMGAGRGRG RGGGADGGAP GKQPSGAPTG
201: LFGPNDWACP MCGNVNWAKR LKCNICNTNK PGQNEGGVRG GRGGGYKELD EQELEETKRR RREAEEDDGE MYDEFGNLKK KYRVKTNQAD TRPAVAAGRA
301: GWEVEELGID KDGRERSRDR QRDRGRDHHY DKDRRRSRSR ERERGKERDY DYDHDRDRDR DYGRERGSRY RN

Arabidopsis Description

TAF15Transcription initiation factor TFIID subunit 15 [Source:UniProtKB/Swiss-Prot;Acc:Q9AST1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.