Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX71498 | Canola | cytosol | 7.34 | 64.15 |
| CDX71499 | Canola | nucleus | 9.83 | 57.23 |
| Solyc04g078050.2.1 | Tomato | nucleus | 51.73 | 51.28 |
| KRH61389 | Soybean | nucleus | 50.65 | 51.26 |
| KRH52077 | Soybean | nucleus | 51.62 | 51.23 |
| Bra035961.1-P | Field mustard | nucleus | 42.44 | 50.45 |
| Bra033662.1-P | Field mustard | nucleus | 41.68 | 50.06 |
| KRH15434 | Soybean | nucleus | 50.54 | 50.05 |
| AT5G43130.2 | Thale cress | nucleus | 45.25 | 49.18 |
| KRH05606 | Soybean | mitochondrion | 50.11 | 47.54 |
| GSMUA_Achr4P14200_001 | Banana | cytosol | 3.13 | 42.65 |
| Os03t0441000-01 | Rice | nucleus | 36.18 | 40.9 |
| TraesCS4B01G150300.3 | Wheat | nucleus | 36.72 | 40.05 |
| TraesCS4A01G163100.1 | Wheat | nucleus | 35.96 | 39.78 |
| TraesCS4D01G160000.1 | Wheat | nucleus | 36.18 | 39.6 |
| AT1G27720.1 | Thale cress | nucleus | 29.91 | 38.47 |
| HORVU4Hr1G034590.13 | Barley | cytosol, nucleus | 35.96 | 38.32 |
| OQU92338 | Sorghum | nucleus | 36.61 | 37.62 |
| KXG31790 | Sorghum | nucleus | 29.27 | 36.72 |
| Os02t0654400-01 | Rice | nucleus | 28.62 | 36.4 |
| Zm00001d029598_P003 | Maize | nucleus | 35.75 | 35.67 |
| PGSC0003DMT400055395 | Potato | nucleus | 22.14 | 34.98 |
| HORVU6Hr1G062340.1 | Barley | nucleus | 29.81 | 34.85 |
| TraesCS6B01G281300.1 | Wheat | nucleus | 29.59 | 34.47 |
| Zm00001d039729_P004 | Maize | nucleus | 28.73 | 34.41 |
| TraesCS6A01G242900.1 | Wheat | nucleus | 29.48 | 34.3 |
| TraesCS6D01G225200.2 | Wheat | endoplasmic reticulum, nucleus, peroxisome, plastid | 29.7 | 32.82 |
| Bra030061.1-P | Field mustard | mitochondrion, nucleus | 27.43 | 31.63 |
| Zm00001d039731_P002 | Maize | nucleus | 13.71 | 24.14 |
Protein Annotations
| MapMan:15.3.5.3.4 | ProteinID:CCB45765 | ProteinID:CCB45765.1 | ncoils:Coil | UniProt:F6GZN3 | EMBL:FN595227 |
| GO:GO:0001075 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0003713 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0005669 | GO:GO:0006139 | GO:GO:0006352 | GO:GO:0008134 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0045944 | GO:GO:0051123 |
| PFAM:PF05236 | PFAM:PF12174 | PANTHER:PTHR15138 | PANTHER:PTHR15138:SF14 | InterPro:RST | InterPro:TAF4 |
| TIGR:TC54872 | UniParc:UPI000210A056 | ArrayExpress:VIT_18s0001g09310 | EnsemblPlantsGene:VIT_18s0001g09310 | EnsemblPlants:VIT_18s0001g09310.t01 | SEG:seg |
Description
No Description!
Coordinates
chr18:+:7798158..7812757
Molecular Weight (calculated)
102110.0 Da
IEP (calculated)
8.161
GRAVY (calculated)
-0.904
Length
926 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLLEEDEDE TMHSGADVEA LTAALNRDIE GDTSTSQPSD SENVLSQGSN HTSSQLFSQW QTSSQDENTD SQSQQELKSL QQQELNSSDL EQKQHGSGVE
101: NQQQVDASHD INRLPLQQKQ SQDDPQQLQS EPNPIQFSQA PGIQISEKNS VQIPEPDRIH NPDKQHQFPE LQKINNQQGI ATEQASNSGN QNKHIPFGML
201: LPSIIPHLDK DRALQLRTLY AKLKKNEIPK LAFVRLMRGI VGDQMLKLAV MKLQQSPTGP SQFQLQSQAS ALQQHLKTPS SIGSQFSDPH SFSQLHQKGQ
301: STPADSSHMP SSAMKVQTDS SYPTTETNSQ KPREMERQSD SHGMQGSQMS SSSLSSAKQE REHSTPFTMY GSAGGNYHSY TGTNVNTSAT STKQQPHDSQ
401: MRQVPLHQNI GSTQMGGTSQ AMNPMSVPKF ERQSSVNDPK RVQGGSLPHP SNSSTLQQSS VPWQSSTNKE QISSMAYVKQ EPADQTNEQQ QKSQLSTPQS
501: LSSFPAVQVE KGNAIPGILK DESLEKQASR IGFSSSMSML PPNSVSSSMG THLDPNVTLG SRIPSVTSPV GINTRTPPKK PSIGQKKPLE ALGSSPPLPS
601: KKQKVSGAFL DQSIEQLNDV TAVSGVNLRE EEEQLFSGPK EDSRVSEASR RVVQEEEERL ILQKAPLQKK LAEIMARCSL KNISNDVERC LSLCVEERLR
701: GFISNLIRLS KQRADVEKPR HRSIITSDIR QQILIMNHKA REEWEKKQAE AEKLRKLNEP EGSTGVDGDK DKDEGRVKSL KANKEEDDKM RTTAANVAAR
801: AAVGGDDMLS KWQLMAEQAR QKREGGIDAA SGSQPGKDAS RKLSSTSGRN ARENQEAEKR GYSTVVSSPG GVRKFGRNNA IVPQTRVARN ITVKDVISVL
901: EREPQMLKST LIYRLYEKMR SGAATE
101: NQQQVDASHD INRLPLQQKQ SQDDPQQLQS EPNPIQFSQA PGIQISEKNS VQIPEPDRIH NPDKQHQFPE LQKINNQQGI ATEQASNSGN QNKHIPFGML
201: LPSIIPHLDK DRALQLRTLY AKLKKNEIPK LAFVRLMRGI VGDQMLKLAV MKLQQSPTGP SQFQLQSQAS ALQQHLKTPS SIGSQFSDPH SFSQLHQKGQ
301: STPADSSHMP SSAMKVQTDS SYPTTETNSQ KPREMERQSD SHGMQGSQMS SSSLSSAKQE REHSTPFTMY GSAGGNYHSY TGTNVNTSAT STKQQPHDSQ
401: MRQVPLHQNI GSTQMGGTSQ AMNPMSVPKF ERQSSVNDPK RVQGGSLPHP SNSSTLQQSS VPWQSSTNKE QISSMAYVKQ EPADQTNEQQ QKSQLSTPQS
501: LSSFPAVQVE KGNAIPGILK DESLEKQASR IGFSSSMSML PPNSVSSSMG THLDPNVTLG SRIPSVTSPV GINTRTPPKK PSIGQKKPLE ALGSSPPLPS
601: KKQKVSGAFL DQSIEQLNDV TAVSGVNLRE EEEQLFSGPK EDSRVSEASR RVVQEEEERL ILQKAPLQKK LAEIMARCSL KNISNDVERC LSLCVEERLR
701: GFISNLIRLS KQRADVEKPR HRSIITSDIR QQILIMNHKA REEWEKKQAE AEKLRKLNEP EGSTGVDGDK DKDEGRVKSL KANKEEDDKM RTTAANVAAR
801: AAVGGDDMLS KWQLMAEQAR QKREGGIDAA SGSQPGKDAS RKLSSTSGRN ARENQEAEKR GYSTVVSSPG GVRKFGRNNA IVPQTRVARN ITVKDVISVL
901: EREPQMLKST LIYRLYEKMR SGAATE
001: MDPSIFKLLE EDEDESMHSG ADVDAFQAAL NRDIEGSMTT SIPHVTNPGN NHSSRQQFST WKNGIGDSNI NVQTQHSLES TQMKEQEGST LENQHQHDLK
101: RANEPHLQHN QPQDLHRAGQ LWENPSQVPQ STGLPISEKN PTGNESDRSH NQESESQYMK LQKMSSQQAR GVEPPVNPMN VNPINRNPKQ VPFAALLPTL
201: MNQLDKDRAL QLRTLYARLK KNEIPKEGFT RHMKDIVGDQ MLRMAVSKLQ QVNYNQGKIG IQAPSTEINN QKSQSDPRAV HLNQLPSSAS GTLGSSVPVQ
301: GLTKHPQHQM QHPPSSFPMY TTSGSFHSFP GPNTNASGST LRPHLHDSHM RHVAHNQPMG STGLGGPPQS TTNMMTMPKF ERPSSVNDPS RVQGGATSHF
401: QNSSSLPLNS APGQGSSVSH VKQESVDQSF EKNNAASMTS NEDLEKESSR MVLSTPNNMA PASSVSPSMT TQLDASTTMN SRGPLGTSQG GANARMPPKK
501: PSVGQKKPLE TLGSSPPPPS KKQKVAGNSM DQSIEQLNDV TAVSGVNLRE EEEQLFSGAK EDGRVSEASR RVVHEEEERL ILQKNPLQRK LAEIMAKAGL
601: KQISNDVERC LSLCVEERMR GLLSHIIRLS KQRVDAEKSR HRTFITSDIR LQINEMNQKV KEEWEKKQAE AEKLKKPSES EEGDGGVDSE KDKEDNRSKG
701: VKGNKEDDDK MRTTAANVAA RAAVGGDDAF LKWQLMAEAR QKSVSEAGKD GNQKTTSGGG KNSKDRQDGG RRFSGTGGRR VGKNQGSSLQ PKVVRTISVK
801: DVVAVLEREP QMSKSTLMYR LIQ
101: RANEPHLQHN QPQDLHRAGQ LWENPSQVPQ STGLPISEKN PTGNESDRSH NQESESQYMK LQKMSSQQAR GVEPPVNPMN VNPINRNPKQ VPFAALLPTL
201: MNQLDKDRAL QLRTLYARLK KNEIPKEGFT RHMKDIVGDQ MLRMAVSKLQ QVNYNQGKIG IQAPSTEINN QKSQSDPRAV HLNQLPSSAS GTLGSSVPVQ
301: GLTKHPQHQM QHPPSSFPMY TTSGSFHSFP GPNTNASGST LRPHLHDSHM RHVAHNQPMG STGLGGPPQS TTNMMTMPKF ERPSSVNDPS RVQGGATSHF
401: QNSSSLPLNS APGQGSSVSH VKQESVDQSF EKNNAASMTS NEDLEKESSR MVLSTPNNMA PASSVSPSMT TQLDASTTMN SRGPLGTSQG GANARMPPKK
501: PSVGQKKPLE TLGSSPPPPS KKQKVAGNSM DQSIEQLNDV TAVSGVNLRE EEEQLFSGAK EDGRVSEASR RVVHEEEERL ILQKNPLQRK LAEIMAKAGL
601: KQISNDVERC LSLCVEERMR GLLSHIIRLS KQRVDAEKSR HRTFITSDIR LQINEMNQKV KEEWEKKQAE AEKLKKPSES EEGDGGVDSE KDKEDNRSKG
701: VKGNKEDDDK MRTTAANVAA RAAVGGDDAF LKWQLMAEAR QKSVSEAGKD GNQKTTSGGG KNSKDRQDGG RRFSGTGGRR VGKNQGSSLQ PKVVRTISVK
801: DVVAVLEREP QMSKSTLMYR LIQ
Arabidopsis Description
TAF4BTranscription initiation factor TFIID subunit 4b [Source:UniProtKB/Swiss-Prot;Acc:F4K4L7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.