Factsheet for Bra035961.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68956	Canola	nucleus	70.09	99.27
Bra033662.1-P	Field mustard	nucleus	76.51	77.3
AT5G43130.2	Thale cress	nucleus	82.41	75.35
GSMUA_Achr4P14200_001	Banana	cytosol	4.24	48.53
VIT_18s0001g09310.t01	Wine grape	nucleus	50.45	42.44
KRH61389	Soybean	nucleus	46.85	39.89
KRH52077	Soybean	nucleus	46.98	39.23
KRH15434	Soybean	nucleus	46.98	39.14
Solyc04g078050.2.1	Tomato	nucleus	45.83	38.22
KRH05606	Soybean	mitochondrion	46.08	36.78
KXG31790	Sorghum	nucleus	32.73	34.55
Os03t0441000-01	Rice	nucleus	35.94	34.19
TraesCS4A01G163100.1	Wheat	nucleus	36.59	34.05
TraesCS4B01G150300.3	Wheat	nucleus	36.71	33.69
Bra030061.1-P	Field mustard	mitochondrion, nucleus	34.66	33.62
TraesCS4D01G160000.1	Wheat	nucleus	36.46	33.57
Os02t0654400-01	Rice	nucleus	31.19	33.38
HORVU4Hr1G034590.13	Barley	cytosol, nucleus	36.33	32.57
OQU92338	Sorghum	nucleus	37.1	32.08
Zm00001d039729_P004	Maize	nucleus	31.58	31.82
TraesCS6B01G281300.1	Wheat	nucleus	31.84	31.2
TraesCS6A01G242900.1	Wheat	nucleus	31.58	30.9
HORVU6Hr1G062340.1	Barley	nucleus	31.32	30.81
TraesCS6D01G225200.2	Wheat	endoplasmic reticulum, nucleus, peroxisome, plastid	31.96	29.71
Zm00001d029598_P003	Maize	nucleus	34.92	29.31
PGSC0003DMT400055395	Potato	nucleus	19.13	25.43
Zm00001d039731_P002	Maize	nucleus	15.66	23.19

Protein Annotations

MapMan:15.3.5.3.4	EnsemblPlantsGene:Bra035961	EnsemblPlants:Bra035961.1	EnsemblPlants:Bra035961.1-P	ncoils:Coil	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005669	GO:GO:0006139
GO:GO:0006352	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	UniProt:M4F4G1
PFAM:PF05236	PFAM:PF12174	PANTHER:PTHR15138	PANTHER:PTHR15138:SF14	InterPro:RST	InterPro:TAF4
UniParc:UPI000253E642	SEG:seg	:	:	:	:

Description

AT5G43130 (E=0.0) TAF4, TAF4B | TAF4 (TBP-ASSOCIATED FACTOR 4); transcription initiation factor

Coordinates

chrScaffold000111:+:11933..15826

Molecular Weight (calculated)

85528.4 Da

IEP (calculated)

9.575

GRAVY (calculated)

-0.917

Length

779 amino acids

Sequence
(BLAST)

001: MDPSIFKLLE EDEDESMHSG ADVDAFQAAL NRDIEGSTNP PGNTHSPNQQ FTATWKNGIG DASMKDQHGS ALDGQHQHDL KRANEPQDLH RPGQHWDNPP
101: QVPQTSGLQI SEKNPTGNEP ESESQFLKLQ KMTSQQARGV EQPPVNPLNR NPKQVPFAAL LPTLMAQLDK DRALQLRTLY SRLKKNEIPK EGFTRHMKDI
201: VGDQMLRLAV SKLQQVGYNQ GKMGIQAPST EINNQKSQSD PRGVVHLNQL SSSTGSSVPV QGLTKHPPHQ MQLPPSSFPM YTSSGNFHSF PGSNTNVSGS
301: PLRPHLHDPH MRHVAHNQTM GSSGLGGPPQ STTNMMTMPK FERQTSVNDP SRVQGGATSH FQNSSSLPPG QGSSMSNVKQ ESVDQSFEQK NAASGASKED
401: LEKDSSRNMS HASSVSPSSI TTQLDASTAM NSRGPLGTSQ AGVNARMPPK KPFVGQKKPL ETLGSSSSPP SKKQKLVPNS MDQSIEQLND VTAVSGVNLR
501: EEEEQLFSGG KEDGRVSEAS RRVVHEEEER LILQKIPLQK KLAEISCDTF LAKVGLKQIS NDVERCLSLC VEERMRGLLS HIIRLSKQRV DTEKSRHRTV
601: ITSDVRQQIN EMNQKVKEEW EKKQAEAEKL KKPSESEEGD GGVDSEKEKE DNRSKGLKGN KEDDDKMRTT AANVAARAAV GGDDTFLKWQ LMAEARQKSV
701: SESGKDGTQK ATSSGGRNSK DKQDSGRRFT GVGGRRLGKN QGSSLQPKVV RTISAKDVVA VLEREPQMSK SILMYRLLQ

Best Arabidopsis Sequence Match ( AT5G43130.1 )
(BLAST)

001: MDPSIFKLLE EDEDESMHSG ADVDAFQAAL NRDIEGSMTT SIPHVTNPGN NHSSRQQFST WKNGIGDSNI NVQTQHSLES TQMKEQEGST LENQHQHDLK
101: RANEPHLQHN QPQDLHRAGQ LWENPSQVPQ STGLPISEKN PTGNESDRSH NQESESQYMK LQKMSSQQAR GVEPPVNPMN VNPINRNPKQ VPFAALLPTL
201: MNQLDKDRAL QLRTLYARLK KNEIPKEGFT RHMKDIVGDQ MLRMAVSKLQ QVNYNQGKIG IQAPSTEINN QKSQSDPRAV HLNQLPSSAS GTLGSSVPVQ
301: GLTKHPQHQM QHPPSSFPMY TTSGSFHSFP GPNTNASGST LRPHLHDSHM RHVAHNQPMG STGLGGPPQS TTNMMTMPKF ERPSSVNDPS RVQGGATSHF
401: QNSSSLPLNS APGQGSSVSH VKQESVDQSF EKNNAASMTS NEDLEKESSR MVLSTPNNMA PASSVSPSMT TQLDASTTMN SRGPLGTSQG GANARMPPKK
501: PSVGQKKPLE TLGSSPPPPS KKQKVAGNSM DQSIEQLNDV TAVSGVNLRE EEEQLFSGAK EDGRVSEASR RVVHEEEERL ILQKNPLQRK LAEIMAKAGL
601: KQISNDVERC LSLCVEERMR GLLSHIIRLS KQRVDAEKSR HRTFITSDIR LQINEMNQKV KEEWEKKQAE AEKLKKPSES EEGDGGVDSE KDKEDNRSKG
701: VKGNKEDDDK MRTTAANVAA RAAVGGDDAF LKWQLMAEAR QKSVSEAGKD GNQKTTSGGG KNSKDRQDGG RRFSGTGGRR VGKNQGSSLQ PKVVRTISVK
801: DVVAVLEREP QMSKSTLMYR LIQ

Arabidopsis Description

TAF4BTranscription initiation factor TFIID subunit 4b [Source:UniProtKB/Swiss-Prot;Acc:F4K4L7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.